Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272690g00003 ATGGCATCAACGGAGGAATTGATGAACAGAAAAGTGGAAACCAACAACAACAATGGTGGGATGAACGCTGCAGAGGCTCAAAACGCTTCTTCTTCGCCATCAGCTAGAGACGCAGAAGCTGCGCTTTACAAGGAGCTATGGCACGCGTGTGCAGGTCCCCTTGTGACAGTGCCGAAAGAAGGAGACCTCGTCTTCTATTTCCCTCAAGGACATATAGAGCAGGTGGAGGCGTCTACGAATCAGGTTGCAGAGCAGCATATGCCGGTTTACGATCTCCCTTCCAAGATCCTTTGCCGTGTCATCAACGTCATGCTCAAGGCGGAGCCGGATACAGATGAGGTATTTGCTCAGGTGACCTTACTTCCGGAGCCAAATCAAGATGAGAATGGCGTTGAGAAAGCGACTCCGCCAGCTCCACCGCCGCGATTTCACGTGCATTCGTTTTGCAAGACTCTAACGGCATCAGACACGAGTACTCATGGTGGATTTTCAGTGCTGAGACGGCACGCTGACGAGTGTCTTCCTCCCCTGGACATGTCAAAGCAGCCACCCACCCAGGAACTGGTGGCCAAGGATCTCCATGGAAATGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCGCGCAGACACTTACTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTGAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGTGCGATGAGGCAGCAGGGTAATGTTCCATCGTCTGTTATATCTAGCCATAGCATGCATCTTGGTGTTCTTGCAACTGCATGGCATGCCATCTTGACCGGGACTATGTTCACTGTTTATTACAAGCCGAGGACCAGTCCAGCAGAATTCATCGTACCATATGATCAGTACATGGAGTCTCTTAAAAACAACTATACTATAGGGCTGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCTGAGCAAAGGTTCACTGGTACTATTGTTGGGATTGAAGATGCTGATTCCAAGAGGTGGCCAGAATCCAAATGGAGAAGTCTAAAGGTGAGATGGGACGAAACATCTAACATACCTCGTCCTGACAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTTAACCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGGTCAAATGCCATTCCATCATCCCCAGATTCTTCTGTTCTTACTCGTGAAGCATCATCTAAAGTAAGCATAGACCCTTTACCACCAAGTGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGGGGCAACTTGGCAGAAAGTAACGAGTCGGATACTGCTGAGAAGTCTGTTGTGTGGCCACCAGCAGTAGATGATGAGAAGACTGATGTTGTTTCTACTTCTAGAAGGTATGGGCAAGAGAGCTGGATGTCAATGGGGAGGCATGAGCTGGCATACTCGGATCTGCTTTCAGGCTTTGGGGCCAATGGAGATCCTTCTTCCCGGCCATCCTTGATTGATCAGTCTGGTTCTGTTGCTAACCCTGGTAGAAAGCACTTATTGGATCGTGAAGGCAAAACTAATGTGCTAAGTAGCAGTCCATGGTCTGTAATGCCTTCCGGTCTATCACTCAATCTCTTGGATCCTAATACAAAAGGTTCTTCCCAAGGTGGTGATACAGCTTACCAAGTTCGAGGGAACATGAGGTATGGTGCATTTGGTGAATACCCTGTTCTTCATGGTCATAAAGTTGAGAATTCACATGGAAACTTGTCAATGCCACCACCACCTGTCACTCAATATGAGAGTCCTCCTTCTAAGGAACTGCTGCCTAAACCGAAATTGGCGAAAACCTCTGACATTTCAAGACCAAAAGATGGTGACTGCAAACTGTTTGGCATCTCACTTCTCAGTAGCCCACCTGCACCAGAGACTCCTACATCACAAAGAAATGTTGCAATTGAGACCGTGAGTCACACGCATCCTACCCACCACCATCGTACATTTGAAAATGAACAGAAGTCTGAAAATTCAATGGGCTCTAAAGCAGCAGATGGCCTAGTTGTAGTTGATGAGCCGCATCTGAGAGATGTTCAACTCAAACCACATGGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCCCTTGGTAGGTCAGTGGACCTTGCGAAGTTCAGTGGCTATGGTGAATTAATTGCTGAGTTGGATCGGTTGTTTGAATTTGGGGGTGAACTGATTTCTGCCAAAAAGGACTGGCTTACTGTATACACTGACAATGAGGGCGACATGATGCTCGTTGGTGATGATCCATGGCAGGAGTTCTGTGCAATGGTACGTAAAATTTACATCTATCCCCGAGAGGAGATCCAGAAAATGATCCCCGGTACCTTGAGTTCAAAAAACGAAGAGAACCAGTTGGCTAGTGAAGGTGCTGATGCACAAGAAATCAAATGCCAGTCGCATCATTCGGCTTCTACACCTGATCATTCTTAG 2523 0.478 MASTEELMNRKVETNNNNGGMNAAEAQNASSSPSARDAEAALYKELWHACAGPLVTVPKEGDLVFYFPQGHIEQVEASTNQVAEQHMPVYDLPSKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENGVEKATPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGLRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRSLKVRWDETSNIPRPDRVSPWKIEPALAPPALNPLPMPRPKRPRSNAIPSSPDSSVLTREASSKVSIDPLPPSGFPRVLQGQEFSTLRGNLAESNESDTAEKSVVWPPAVDDEKTDVVSTSRRYGQESWMSMGRHELAYSDLLSGFGANGDPSSRPSLIDQSGSVANPGRKHLLDREGKTNVLSSSPWSVMPSGLSLNLLDPNTKGSSQGGDTAYQVRGNMRYGAFGEYPVLHGHKVENSHGNLSMPPPPVTQYESPPSKELLPKPKLAKTSDISRPKDGDCKLFGISLLSSPPAPETPTSQRNVAIETVSHTHPTHHHRTFENEQKSENSMGSKAADGLVVVDEPHLRDVQLKPHGGSARSCTKVHKKGIALGRSVDLAKFSGYGELIAELDRLFEFGGELISAKKDWLTVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPREEIQKMIPGTLSSKNEENQLASEGADAQEIKCQSHHSASTPDHS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272690g00003 840 Gene3D - 710 803 - -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 591 629 - -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 503 517 - -
Stsc272690g00003 840 CDD B3_DNA 146 248 IPR003340 GO:0003677
Stsc272690g00003 840 SMART B3_2 148 250 IPR003340 GO:0003677
Stsc272690g00003 840 Gene3D - 145 250 IPR015300 -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 380 431 - -
Stsc272690g00003 840 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Stsc272690g00003 840 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc272690g00003 840 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 503 524 - -
Stsc272690g00003 840 Pfam AUX/IAA family 712 796 IPR033389 -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 13 33 - -
Stsc272690g00003 840 FunFam Auxin response factor 146 250 - -
Stsc272690g00003 840 ProSiteProfiles PB1 domain profile. 714 796 IPR000270 GO:0005515
Stsc272690g00003 840 FunFam Auxin response factor 311 383 - -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 380 398 - -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 805 840 - -
Stsc272690g00003 840 MobiDBLite consensus disorder prediction 400 415 - -
Stsc272690g00003 840 Gene3D - 311 381 - -
Stsc272690g00003 840 SUPERFAMILY CAD & PB1 domains 717 791 - -
Stsc272690g00003 840 SUPERFAMILY DNA-binding pseudobarrel domain 144 277 IPR015300 -
Stsc272690g00003 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272690g00003 Stsc-Chr272690 15132 19932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272690g00003 23 840 B3 DNA Binding Superfamily AT5G62000 65.197 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc272690g00003 AUX_IAA 8.2e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272690g00003 - - gmx:100815956 1368.6