Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272683g00005 ATGCCGCGGTCGAGCTCGCACCATCAGCGTCAGAGCTCCGATACCTTCATCTTTGAAACAACCTCTCGCGGGAGATGGTTTCAGCAGGAGTTAGGGTCTTACGGTGGTGGAGGAGGAGGGTTGTTAGGGTCTCGGTCTTCGAGCTTGAGGAAGAACGACGATGATCGGGTTTTGACCAGTGGCCTCCTAGACCTGCATTCCTTCAATACTGAGCTTTTACCTGAGGGACAAATTTTTTTTGACGACTCGGCGGAGAACATTCTTGGCGGCAGCAGACTTGGAAACAAATTCCTCGGCTTGTCTGAGAGCCAAGTCCTTAGGAGTTCCTCGACAGATAAAGAGAGAGCAAACAATGTTGCTAAGATCAAAGTTGTGGTTCGGAAGAGACCACTAAATAAGAAGGAAGTAGCAAAGAAAGAGGAGGACATTATTACCATAGAATCAAATTCTCTTACAGTTCATGAAAGAAAACTAAAGGTTGACTTAACGGAATATGTTGAGAAACATGAGTTTGTTTTTGATGCTGTGCTGAATGAAGGTGTTTCAAATGATAATGTATATGCAGAGACCGTGGAGCCAATAGTTCCATTGATTTTCCAGCGGACAAAAGCAACTTGCTTTGCATATGGCCAAACTGGAAGTGGGAAGACATACACTATGCAACCATTGCCTCTAAAAGCATCTCAAGATATTTTGAGACTAATGCACCATACATATCGGAACCAGGGTTTCCAGTTGAATGTTAGTTTCTTCGAAATATATGGGGGTAAAGTATTTGATCTCCTCAATGATCGAAAAAAACTTTTCATGAGGGAGGATGGGAAACAGCAGGTGTGCATTGTTGGCCTACAAGAATACAGAGTATCTAAAGTTGAGACAATCAAGGAACTTATTGAGAAGGGAAACGCTGCAAGAAGTACTGGTACAACCGGTGCAAACGAGGAGTCGTCTAGATCTCATGCTATACTTCAACTTTGTATCAAGAGATCAACTGATGCCGCAGAATCAAAACCTGCTCGAATGGTTGGCAAGCTATCTTTTATAGATTTGGCTGNNNNNNNNNNCGAACGTGGTGCAGATACAACAGATAATGATAAACAGACTAGAATTGAAGGTGCTGAGATTAATAAAAGCTTACTTGCATTAAAAGAATGCATCAGAGCTCTAGACAATGACCAAGGGCATATTCCATTCAGAGGAAGTAAATTGACTGAAGTTCTGCGAGACTCTTTTGTTGGTGACTCACGTACTGTGATGATATCATGCATTTCGCCAAGCTCAGGATCATGTGAGCATACTCTCAACACTTTGAGATATGCTGACAGGGTAAAGAGCTTGTCAAAAGGGAACAGCTCCAAAAGGGATCCTGTTTCTTCTTCAAATGTTAGAGACTCAACTGTATTGAATCCTGGGTCTTCAATTTTATCTCAGGAGGATACCTTCGAGGATGAAGCAACACATGTGTATAGTGAGAAGAATAGATTTGTTTGGTCCAAACAACTTGAAAGAGAACCTTCTCCTCCAATGATTGTGGATCGTGTTCCAAGTGGTAGGACCAGTGGAAATTTGGCATCATCTATGTTTTCGGATTTACAAAGAGGTAAACGAGGCAGTCAAAATGACAAAGCTGAAAATGAAATTGATTATCCAGTACCAACATATGAACAAGACAGAACAAGGAAAACCAATAAGAGGGTGGATGCCAGCCAATTATCTACTTTAGAGGACAAGAGAAAGATAGGGTCTCATGTTAAACATGTAAATCCGCCACAATTTGAGGCTAATCATTCTGATCCTGATGATGATTTAAATACCCTATTGAAGGAAGAGGAAGATCTTGTATCTTCTCATCGGAGACAAGTGGAGGAAACAATAGACATTGTTAAGGAGGAGATGAATTTGCTTGTTGAAGCTGACCAACCAGGAAATCATTTGGATGATTACATTACTAAATTGAATACCATTTTGTCACAAAAGGCTGCAGGAATCCTTCAATTGCAGACTCAGTTGGCTCAGTTTCAGAGACGCTTAAATGAGTATAATGTTTTCATATCTCATGGTAATTAA 2067 0.4093 MPRSSSHHQRQSSDTFIFETTSRGRWFQQELGSYGGGGGGLLGSRSSSLRKNDDDRVLTSGLLDLHSFNTELLPEGQIFFDDSAENILGGSRLGNKFLGLSESQVLRSSSTDKERANNVAKIKVVVRKRPLNKKEVAKKEEDIITIESNSLTVHERKLKVDLTEYVEKHEFVFDAVLNEGVSNDNVYAETVEPIVPLIFQRTKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYRNQGFQLNVSFFEIYGGKVFDLLNDRKKLFMREDGKQQVCIVGLQEYRVSKVETIKELIEKGNAARSTGTTGANEESSRSHAILQLCIKRSTDAAESKPARMVGKLSFIDLAXXXXERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNSSKRDPVSSSNVRDSTVLNPGSSILSQEDTFEDEATHVYSEKNRFVWSKQLEREPSPPMIVDRVPSGRTSGNLASSMFSDLQRGKRGSQNDKAENEIDYPVPTYEQDRTRKTNKRVDASQLSTLEDKRKIGSHVKHVNPPQFEANHSDPDDDLNTLLKEEEDLVSSHRRQVEETIDIVKEEMNLLVEADQPGNHLDDYITKLNTILSQKAAGILQLQTQLAQFQRRLNEYNVFISHGN 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272683g00005 688 Coils Coil 618 638 - -
Stsc272683g00005 688 PRINTS Kinesin heavy chain signature 201 222 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 PRINTS Kinesin heavy chain signature 310 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 PRINTS Kinesin heavy chain signature 396 417 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 PRINTS Kinesin heavy chain signature 344 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 MobiDBLite consensus disorder prediction 450 479 - -
Stsc272683g00005 688 FunFam Kinesin-like protein 101 449 - -
Stsc272683g00005 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 446 IPR027417 -
Stsc272683g00005 688 CDD KISc_KIF2_like 121 444 - -
Stsc272683g00005 688 Pfam Kinesin motor domain 127 445 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 MobiDBLite consensus disorder prediction 445 479 - -
Stsc272683g00005 688 ProSiteProfiles Kinesin motor domain profile. 121 446 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 SMART kinesin_4 119 452 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272683g00005 688 PANTHER KINESIN-RELATED PROTEIN 6 58 682 IPR027640 GO:0003777|GO:0007018
Stsc272683g00005 688 Gene3D Kinesin motor domain 98 449 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272683g00005 Stsc-Chr272683 17670 22383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272683g00005 88 453 Calmodulin-binding Proteins AT5G65930 33.594 2.21e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272683g00005 K10393 - gmx:100775562 1056.97