Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272678g00001 AACCAATCCCATCACCATTTGCAACACCTCTCGTCAGCAAGGGTTTCCATATTGGAAAGAGGGTTGAGTAAAATTGAGAACAAGTATACTCTGAAACTCAAGTGCTTTGGCAATGGGATGGGTGATGATGGATATAAGTGGAGGAAGTATGGTCAAAAATCTATTAAGAATAGCCCAAATCCTAGGAGCTACTATAGATGCACCAATCCAAGGTGCAGTGCAAAGAAGCAAGTTGAGAGATCCAATGAGGACCCAGACACACTTATAATCACATATGAAGGTCTTCACTTGCACTTTGCATACCCACATTTTCTCACAGGACAACCACAACCGTCGCAATCACAATCAGATCCTCCAATCAAGAAGCCCAAGCCAACGCCAACACCTTCACCACAAAATAAATCGCAACACATTCTAGAAGCTAAGGATGACGTCCAAGCTAACCTAACTACTTTGGGCCCAATACAAACCACTTTAATGGGCTCTCAAGAAGATGTGGCCCAATTTAATTTGGGCTCACAAGGGCTTCTTGAGGACATGGTGCCATTCATGGTTAGGAACCCCCATAACAGTGCCAATAGCACTCACTCACTTTTCTCTTGTTCTTCTCCACATTACTCAACAACATCCTGTTATACTGTTGGCTTGAACTTTAGCAATTAG 663 0.4299 NQSHHHLQHLSSARVSILERGLSKIENKYTLKLKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPHFLTGQPQPSQSQSDPPIKKPKPTPTPSPQNKSQHILEAKDDVQANLTTLGPIQTTLMGSQEDVAQFNLGSQGLLEDMVPFMVRNPHNSANSTHSLFSCSSPHYSTTSCYTVGLNFSN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272678g00001 220 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 128 IPR044810 GO:0003700
Stsc272678g00001 220 SMART WRKY_cls 41 100 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272678g00001 220 MobiDBLite consensus disorder prediction 116 130 - -
Stsc272678g00001 220 FunFam WRKY transcription factor 28 102 - -
Stsc272678g00001 220 Gene3D WRKY domain 37 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272678g00001 220 ProSiteProfiles WRKY domain profile. 36 101 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272678g00001 220 MobiDBLite consensus disorder prediction 104 135 - -
Stsc272678g00001 220 SUPERFAMILY WRKY DNA-binding domain 39 98 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272678g00001 220 Pfam WRKY DNA -binding domain 42 98 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272678g00001 Stsc-Chr272678 10573 14634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272678g00001 5 187 WRKY Transcription Factor Family AT5G43290 44.560 4.72e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272678g00001 WRKY 3.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272678g00001 - - aip:107637904 330.487