Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272676g00003 ATGTTTGCATTTTTCCCAAGGCTTAATGCCATGAAGCTCTTAGCAATTTGTTGGCTTCTTTTAATATATACATTCCTGCTGATTGCTGGTTCCTTCACGACCAGTACTACTTCAGTTGCTATCCAAGGTAACGAAGAAGCGTCTGCTTTGCTGAAATGGAAAGCCAGCTTTGAGAAGCAAAGCCAGGCTTTTCTCTCTTCATGGAATGGTAGCAACCCCTGCAGCCAATGGGTTGGAATAGCATGTAACGACTCCAAATCCGTCTCATTGCTAAATTTTACCAACTTTGCGATAAGAGGTACTTTTCAGACTCTGAATTTCTCCTCTCTTCCCAACATCCGCACAATAGTCTTGAGGAACAACTCCTTTTATGGAACCATTCCCAAACAAATTGGTGTATTGTCCAATCTGGACACTCTTGATGTTCATGACAATCAGTTATCTGGTTTCATTCCCAAAAGTATTGGTAGTTTGTCTAAACTCACCTTTCTTGATTTGGCTATCAACAGTTTCTTGGGAATGGTTCCACCTGAGATGGGTGAGCTGGCCAACTTGTCACATCTAGATGTTGGAGGCAACAAGCTCTTGGGCAACATTCCCCAAGAAATTTGGCGTTTGAGAAACTTGAAGTATTTGTCATTTGCATACAATGATAATTTAAGGGGAACTATTACTGCCGAAATTGGAATGTTGGGGAATCTAACATATCTGGATTTTGAACATTGCAATTTCACAGATGAAGTTGGAAAACTTCATTCTCTTACTACCATCGAATTGTTATATAATAACCTTTCCGGGCCAATCCCACCTTCCATTGGGAATTTAGTGAAGTTAGAGACCATTGACCTTAGAAAAAATAGTCTTTCCGGGCCAATCCCACCTTCCATAGGTAACTTGGTGAATTTAAGCTCTATTCTTCTTGGTGTGAATACACTCGTTGGGCCAATTCCTTCCACTATCGGAAAATTGGTTAATTTGACTCAACTTGACCTTGGTGAAAATAAACTCTCTGGTACAATTCCATTCTCCATTGGAAACTTGACAGAACTCTCGGTATTAAGTTTATTGTCAAATGAATTTAGTGGCGAAATTCCAATAGAGATGAACAATCTTACCAAACTGAAAATTCTACAATTGTTTAATAATAGTTTCCATGGCCAGTTACCTCACAACATTTGCTCTAGTGGAAATCTGGTTAGATTTTCAGCCAGCAACAACTACTTCACAGGAGTTGTTCCAAGTAGCTTAAAAAATTGTTCCAGCCTTGTGAGATTAAGGCTTGGCGGAAACCAAATAGCTGGAAATATGACCGAATCTTTCGGTGTATATCCAAACTTGGACTTCATTGATTTGAGTGAAAATAATTTCCATGGCCACCTTTCATCAAAGTGGGGAAAATGTTCCAACCTGACATCCCTCAAGATCTCCAACAACAATCTGTCAGGTCATATACCAACGGAACTAAGTGAGGCAACTAAATTACAAGAACTTGACTTGTCTTCGAATCATCTTACCGGAGTAATCCCAAAAGAGTTTGGCAAGTTGACTTCGCTGATAAATCTCTTATTAAGCAACAACAATTTCTTAGGAAATGTTCCCATACAGATTTCATCCTTGCGAGAACTTGAGACCTTGGATCTTTCCAGGAATAATTTCAGAGGCCTCATCATAAAAGAACTTAGCATGTTGCCTAAGTTGTCCAACTTGAGTATGGCCCAAAATCAGTTTAACGGAACTATTCCTGCCGAGCTTGCGCAACTAAATTCTCTTCGTGATCTCGATCTTGGTCAGAATCTCTTGGATGGAACTATTCCATCATCACTTGGGCAATTGACAATGTTAGAAACATTGAACCTTTCCCATAACAATCTTTCTGGTGTCATTCCCTCTAGTTTTGATGGCATGTTAAGTTTGACATCTGTGGATATATCATACAACCAATTAGAAGGCCCACTTCCAAATACTCCATTCGGCTTCAAAAATGCTACATTTGATGAATTGAGAGAAAATAAAGGTTTGTGTGGTAATGTCACCGGTATTGAGCATTGCCCAGCATCATCAAGTGGTTATTCTCCTCATCATCACCATAAACATGTTGTGCTCATATTGGTCCTTACTTTGGCCATTATAACAGTAGCAATCATAGCCTTGTGGATATCATGCCGTCTCTACCAAAGCGGAGGCCCAAAAGAAAGCCATGCTATAGAGACACGAACTCACAATTTATTTGCCATATGGAGCTACGATGGCAAGATGGTGTATGAAGACATTATTGAGGCCACTGAAGATTTTGACGACAAATATCTCATTGGAGTTGGAGGCTTTGGATCTGTTTTCAAAGCTGAGTTGTCCACCGGTCAAGTTGTTGCTGTGAAGAAGCTCCATTCAACACCAAATGATGAAGAAATGCCCAATCTCAAAACTTTCCACCGAGAGATTCAAGCCTTGACTGAGATCCGTCATCGCAACATTGTGAAGCTATATGGGTTTTGTTCTCATTCTCGGTACTGCTTCTTGGTTTATGAGATTATAGAGAGGGGAAGCATTAATAAGATTCTGGGCGATGATGAAGAAGCGGTTGAATTCGATTGGAATAGGAGGGTGAATGCTGTTAAAGGAGTGGCTAATGCTTTATGTTACATGCACCATGATTGTTCACCTCCTATAGTGCACAGGGATATATCAACAAAGAATGTTCTTCTTGATTTGGAATATGAGGCTCATTTAGCAGATTTTGGAACATCCAAAATTCTCAATCCAAATTCATCAAATTGGACCTCATTTGCAGGGACCTTTGGTTATGCAGCTCCAGAACTTGCTTACACAATGGAAGTGAATGAAAAGTGTGATGTGTATAGCTTTGGGATATTAGCTTTAGAAATACTTTTGGGGAAGCATCCGGGAGATGCTGCATCATCATCATGTATGACAATGGCACATACACCAACACTTGATAATAATTTGTTTCTGAATGATAAGCTGGATCGTCGTCTTCCTTTCCCTACAAATCCAATAGCAGGAGAGCTTGTGCAGATTGTGAAGATAGCAAGTGCATGTTTGACAGAAAGTCCACGTTCTCGTCCCACCATGGAACAAGTGGTGAAGGAACTTGTGGTGGAAAACACTTCAATTTCTGTTGCGTGA 3144 0.4011 MFAFFPRLNAMKLLAICWLLLIYTFLLIAGSFTTSTTSVAIQGNEEASALLKWKASFEKQSQAFLSSWNGSNPCSQWVGIACNDSKSVSLLNFTNFAIRGTFQTLNFSSLPNIRTIVLRNNSFYGTIPKQIGVLSNLDTLDVHDNQLSGFIPKSIGSLSKLTFLDLAINSFLGMVPPEMGELANLSHLDVGGNKLLGNIPQEIWRLRNLKYLSFAYNDNLRGTITAEIGMLGNLTYLDFEHCNFTDEVGKLHSLTTIELLYNNLSGPIPPSIGNLVKLETIDLRKNSLSGPIPPSIGNLVNLSSILLGVNTLVGPIPSTIGKLVNLTQLDLGENKLSGTIPFSIGNLTELSVLSLLSNEFSGEIPIEMNNLTKLKILQLFNNSFHGQLPHNICSSGNLVRFSASNNYFTGVVPSSLKNCSSLVRLRLGGNQIAGNMTESFGVYPNLDFIDLSENNFHGHLSSKWGKCSNLTSLKISNNNLSGHIPTELSEATKLQELDLSSNHLTGVIPKEFGKLTSLINLLLSNNNFLGNVPIQISSLRELETLDLSRNNFRGLIIKELSMLPKLSNLSMAQNQFNGTIPAELAQLNSLRDLDLGQNLLDGTIPSSLGQLTMLETLNLSHNNLSGVIPSSFDGMLSLTSVDISYNQLEGPLPNTPFGFKNATFDELRENKGLCGNVTGIEHCPASSSGYSPHHHHKHVVLILVLTLAIITVAIIALWISCRLYQSGGPKESHAIETRTHNLFAIWSYDGKMVYEDIIEATEDFDDKYLIGVGGFGSVFKAELSTGQVVAVKKLHSTPNDEEMPNLKTFHREIQALTEIRHRNIVKLYGFCSHSRYCFLVYEIIERGSINKILGDDEEAVEFDWNRRVNAVKGVANALCYMHHDCSPPIVHRDISTKNVLLDLEYEAHLADFGTSKILNPNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILALEILLGKHPGDAASSSCMTMAHTPTLDNNLFLNDKLDRRLPFPTNPIAGELVQIVKIASACLTESPRSRPTMEQVVKELVVENTSISVA 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272676g00003 1047 FunFam Nuclear pore complex protein NUP107 43 187 - -
Stsc272676g00003 1047 Gene3D Ribonuclease Inhibitor 373 685 IPR032675 -
Stsc272676g00003 1047 ProSiteProfiles Protein kinase domain profile. 764 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272676g00003 1047 Pfam Leucine rich repeat 111 169 IPR001611 GO:0005515
Stsc272676g00003 1047 Pfam Leucine rich repeat 468 528 IPR001611 GO:0005515
Stsc272676g00003 1047 Pfam Leucine rich repeat 589 648 IPR001611 GO:0005515
Stsc272676g00003 1047 ProSitePatterns Protein kinases ATP-binding region signature. 770 793 IPR017441 GO:0005524
Stsc272676g00003 1047 PRINTS Leucine-rich repeat signature 611 624 - -
Stsc272676g00003 1047 PRINTS Leucine-rich repeat signature 494 507 - -
Stsc272676g00003 1047 Pfam Protein kinase domain 766 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272676g00003 1047 Pfam Leucine Rich Repeat 277 299 IPR001611 GO:0005515
Stsc272676g00003 1047 FunFam MDIS1-interacting receptor like kinase 2 844 1043 - -
Stsc272676g00003 1047 FunFam Leucine-rich repeat receptor protein kinase MSP1 729 843 - -
Stsc272676g00003 1047 Gene3D Phosphorylase Kinase; domain 1 729 842 - -
Stsc272676g00003 1047 FunFam Leucine-rich receptor-like protein kinase family protein 244 342 - -
Stsc272676g00003 1047 ProSitePatterns Tyrosine protein kinases specific active-site signature. 889 901 IPR008266 GO:0004672|GO:0006468
Stsc272676g00003 1047 Gene3D Ribonuclease Inhibitor 250 369 IPR032675 -
Stsc272676g00003 1047 Pfam Leucine rich repeat N-terminal domain 44 83 IPR013210 -
Stsc272676g00003 1047 SMART LRR_typ_2 539 562 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 323 347 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 134 158 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 275 299 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 371 395 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 182 206 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 492 514 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 611 634 IPR003591 -
Stsc272676g00003 1047 SMART LRR_typ_2 587 610 IPR003591 -
Stsc272676g00003 1047 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 373 687 - -
Stsc272676g00003 1047 Gene3D Ribonuclease Inhibitor 43 249 IPR032675 -
Stsc272676g00003 1047 SUPERFAMILY L domain-like 45 290 - -
Stsc272676g00003 1047 SUPERFAMILY RNI-like 329 650 - -
Stsc272676g00003 1047 SUPERFAMILY Protein kinase-like (PK-like) 747 1038 IPR011009 -
Stsc272676g00003 1047 Gene3D Transferase(Phosphotransferase) domain 1 844 1045 - -
Stsc272676g00003 1047 SMART LRR_sd22_2 134 160 - -
Stsc272676g00003 1047 SMART LRR_sd22_2 323 349 - -
Stsc272676g00003 1047 SMART LRR_sd22_2 587 610 - -
Stsc272676g00003 1047 SMART LRR_sd22_2 275 301 - -
Stsc272676g00003 1047 SMART LRR_sd22_2 491 512 - -
Stsc272676g00003 1047 SMART LRR_sd22_2 182 201 - -
Stsc272676g00003 1047 PANTHER LEUCINE RICH REPEAT KINASE 2 34 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272676g00003 Stsc-Chr272676 17451 21228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272676g00003 20 937 Receptor kinase-like Gene Family AT4G08850 44.528 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272676g00003 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272676g00003 - - gmx:100811066 1087.79