Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272672g00002 ATGGACTTGGAAAGCATCGAGTGTGTGTCATCCTCGGATGGCATGGACGAGGATGAGATCCATGCTCACCATCATTCTGAGTTTCCTTCAACAAAACCTCGCAATGGAGGAGCCAATAACAACAATTCTGTGGGTCCCAATGCCATAACTCCTGCAACCAGCGTCCATGAGTTGCTGGAATGCCCTGTGTGTACAAATTCAATGTACCCCCCAATTCATCAGTGCCACAACGGTCACACGCTGTGTTCGACGTGTAAAACAAGGGTACACAACCGATGCCCCACTTGTAGACAAGAGCTTGGAGATATCAGGTGCCTAGCTTTGGAGAAGGTGGCTGAATCGCTAGAGTTACCATGCAAGTTCTATACCCTTGGATGTCCAGAAATATTTCCATATTACAGCAAGCTTAAGCATGAAACTGTATGCAATTTTAGGCCATACAGTTGTCCTTATGCTGGATCTGAGTGTTCCGTAGTCGGCGATATACCCTTCCTCGTCACTCATTTGAGGGACGACCATAAAGTCGACATGCACACAGGATGCACATTCAACCATAGATATGTGAAATCAAATCCCAGGGAAGTAGAGAACGCAACCTGGATGCTCACAGTGTTCCATTGTTTTGGTCAGTACTTCTGCCTCCACTTTGAAGCTTTCCAGCTTGGGATGGCTCCTGTGTACATGGCATTCCTTCGATTTATGGGTGACGAGAACGAAGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTCATCTGGGAGGGTACGCCTAGAAGTGTTCGGGATAGTCACCGGAAAGTCAGGGATAGTCATGATGGCCTCATCATTCAACGAAACATGGCCCTATTTTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTCAGAGTCACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGGTGGAGTTTGCATACCAAATCTTTGTAGCTGA 972 0.4712 MDLESIECVSSSDGMDEDEIHAHHHSEFPSTKPRNGGANNNNSVGPNAITPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYTLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVTHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272672g00002 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 165 IPR013083 -
Stsc272672g00002 323 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Stsc272672g00002 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 308 - -
Stsc272672g00002 323 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Stsc272672g00002 323 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Stsc272672g00002 323 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Stsc272672g00002 323 MobiDBLite consensus disorder prediction 23 49 - -
Stsc272672g00002 323 SUPERFAMILY TRAF domain-like 114 306 - -
Stsc272672g00002 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 302 IPR008974 GO:0005515
Stsc272672g00002 323 CDD Sina 175 303 - -
Stsc272672g00002 323 MobiDBLite consensus disorder prediction 32 49 - -
Stsc272672g00002 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 113 IPR013083 -
Stsc272672g00002 323 SUPERFAMILY RING/U-box 55 101 - -
Stsc272672g00002 323 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc272672g00002 323 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Stsc272672g00002 323 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272672g00002 Stsc-Chr272672 5620 8424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272672g00002 10 309 C3H Transcription Factor Family AT2G41980 72.667 4.08e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272672g00002 K04506 - gmx:100810573 656.366