Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272664g00003 ATGAAGAAGAAGTATAAAGGGGTGAGAATGAGGAGCTGGGGTTCATGGGTTTCTGAGATTAGAGCACCCAACCAGAAAACAAGAATATGGCTTGGTTCATATTCAACCGCTGAAGCCGCAGCAAGAGCCTATGACGCTGCACTTCTTTGCCTTAAAGGAACCTCCGCCAATCTGAACTTCCCATTGTCAAATTATTCATTGTCATACGGCATTCAAGAACTAAAGGGGACTGATATTATGTCCCCGAAATCGATTCAAAGAGTTGCCGCCGCTGCTGCAGCAGACACAGTTCTTGATAACAAGAAGGGAAGCAATAATAGTAACCCACCCTCATTTCCTCCTCCCACCACTTCTTCCTCAGGTTCATCAATGGTTTCATCACCATCAATGTCACCATGGGATTGCGTTGGTGATGGTGTGAATATCCTTAATGATTATAAAAAACATGAAACATTATTGGCTATGAATATGATGGACTATTATTGCACCGGTTTTAGTGATGTGTTTCAATCCCCAAGATATGCTGATCAGATGCTAAGTGATGCAGCGTTCTTTGATATTGATTCGACTCAGATGATGATGTTTGATGATCTGTATAGTGACATTCGTTTGTGGAACTTCTGCTGA 627 0.4211 MKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGTSANLNFPLSNYSLSYGIQELKGTDIMSPKSIQRVAAAAAADTVLDNKKGSNNSNPPSFPPPTTSSSGSSMVSSPSMSPWDCVGDGVNILNDYKKHETLLAMNMMDYYCTGFSDVFQSPRYADQMLSDAAFFDIDSTQMMMFDDLYSDIRLWNFC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272664g00003 208 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
Stsc272664g00003 208 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Stsc272664g00003 208 Pfam AP2 domain 4 53 IPR001471 GO:0003700|GO:0006355
Stsc272664g00003 208 PRINTS Ethylene responsive element binding protein signature 27 43 IPR001471 GO:0003700|GO:0006355
Stsc272664g00003 208 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Stsc272664g00003 208 Gene3D AP2/ERF domain 3 63 IPR036955 GO:0003700|GO:0006355
Stsc272664g00003 208 FunFam ethylene-responsive transcription factor ERF014-like 3 63 - -
Stsc272664g00003 208 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Stsc272664g00003 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 148 - -
Stsc272664g00003 208 SUPERFAMILY DNA-binding domain 4 63 IPR016177 GO:0003677
Stsc272664g00003 208 MobiDBLite consensus disorder prediction 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272664g00003 Stsc-Chr272664 11435 12061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272664g00003 5 93 AP2-EREBP Transcription Factor Family AT1G21910 77.528 2.37e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272664g00003 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272664g00003 - - gmx:100813615 191.045