Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272662g00001 ATGGAAGAACCACGGTCGCTTCATCCTAAATCTCACGGTTCTCTTGTTAAAGGAATGGAAAATGTGGTGGTAACTGTGAGCGGCTACCATGGCACCGAGCGGTTCAATCTCATCAGGCTGATTTCACATGCTGGCGCCAATTACGTTGGGTCAATGTCGAAATCGATCACGCACTTGGTTTGTTGGAAATTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAACCACCGATGGATTGAAGACTGCATAAAGGAAGGAAGGCGTGTGCCAGAAGAGTCATATATCTTGCAAAGTGGGCATGAAGTTGGGCCACTGTTGCTGGATGTTCCAGCAACTAGATTGACAAAAAATGTAGCTACACGTGATCAAATATATGATCTTGACTCTGGAGAGCAAACAACTGAGGTCAGTTGCGGAGCCTCGGAAAATTTTGTTTGGGAAGATTTAAATACAAAGCATGACAAGTCCAAGGCTTATCCTTCTAGACGGTCAAGGAAAGGTAAAAGAAGCATCTGTGCTGGTAATGGAGTTTGTAGTGCGGCTGGACCTTCTCGTAAAGGCAGAAGGATTGTAAATGATATTGTTGATGAAGTGGTGTTGGACCCTTTATTTGATGTAGTCCAGGATGACCGCCATAATAGATGGGATAGATTAAACCATGATGCTGCAGCTACCACTAGCCTTTCTAGTGGTGTCAATAATGAAAATACTCTGGAAAATGGAGCAACAACAGATGCTGGATTGCTTACTCAAAATGAAACTGTCAATGGAACTTCAGATAGCACTGGTGCCGAAAAGTTCACAGATGATTATCAGCACGAACATGTTACTGGCTTACCTACGTCCGGTGAGTTATCCTGTGTTATCTGTCACGCGGATTTCAGCACAACAAGGGGAATTCTTCCGTGTGGACATCGATTTTGTTTTGGATGCATTCAGAGTTGGGCTAATCATAGGATTTCAACGAGGAAAAATGCAACCTGTCCTTTATGCAAGGCAATTTTTCAGTCAATCAAGAAGGTTGAGCAGGCAGGTAGAATTGATCAAAAAGTATACACCCAGACAGTCCCATGTGACAATTCAGCTGAAGATGTTTTTATCCTTCCACCTGAAGGATTACCTGATTACACTTTTGAGTCCTCACAGGCAAACTCTTGTGTAGTTTGTGGTGGTTTGGAACCAGAGGATCTCCTTGAAAGTTGTGATATTTGCCGAACTCGAAGAATCCATATCTATTGCCTGGACCCTCCTATAACTCCATGGACTTGCAGTCCTTGCAACCAACTACGGAGAAGTTATTATGATCGCTTGTATTAA 1335 0.4277 MEEPRSLHPKSHGSLVKGMENVVVTVSGYHGTERFNLIRLISHAGANYVGSMSKSITHLVCWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGHEVGPLLLDVPATRLTKNVATRDQIYDLDSGEQTTEVSCGASENFVWEDLNTKHDKSKAYPSRRSRKGKRSICAGNGVCSAAGPSRKGRRIVNDIVDEVVLDPLFDVVQDDRHNRWDRLNHDAAATTSLSSGVNNENTLENGATTDAGLLTQNETVNGTSDSTGAEKFTDDYQHEHVTGLPTSGELSCVICHADFSTTRGILPCGHRFCFGCIQSWANHRISTRKNATCPLCKAIFQSIKKVEQAGRIDQKVYTQTVPCDNSAEDVFILPPEGLPDYTFESSQANSCVVCGGLEPEDLLESCDICRTRRIHIYCLDPPITPWTCSPCNQLRRSYYDRLY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272662g00001 444 Pfam Zinc finger, C3HC4 type (RING finger) 293 337 IPR018957 GO:0046872
Stsc272662g00001 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 373 IPR013083 -
Stsc272662g00001 444 ProSitePatterns Zinc finger RING-type signature. 309 318 IPR017907 -
Stsc272662g00001 444 Gene3D BRCT domain 14 101 IPR036420 -
Stsc272662g00001 444 Pfam twin BRCT domain 22 84 IPR001357 -
Stsc272662g00001 444 SUPERFAMILY RING/U-box 279 346 - -
Stsc272662g00001 444 PANTHER F5A8.9 PROTEIN 269 440 - -
Stsc272662g00001 444 SMART ring_2 293 337 IPR001841 -
Stsc272662g00001 444 SUPERFAMILY FYVE/PHD zinc finger 379 435 IPR011011 -
Stsc272662g00001 444 ProSiteProfiles BRCT domain profile. 14 102 IPR001357 -
Stsc272662g00001 444 SMART BRCT_7 16 92 IPR001357 -
Stsc272662g00001 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 442 IPR013083 -
Stsc272662g00001 444 MobiDBLite consensus disorder prediction 232 271 - -
Stsc272662g00001 444 SUPERFAMILY BRCT domain 16 103 IPR036420 -
Stsc272662g00001 444 ProSiteProfiles Zinc finger RING-type profile. 293 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272662g00001 Stsc-Chr272662 2930 7546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272662g00001 56 108 Core DNA Replication Machinery Family AT4G02110 51.852 4.05e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272662g00001 - - adu:107471428 719.924