Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272661g00004 ATGGCAGCTACATTCACCATCACAACAACACCCGCAGCAACTCTCTCAAATGTTTCAGGAAACAGGATCGGAATCAGAGGCTTGAACCCTAACCCTAACCCTAACGCTATCAGTTGCAGTGCGACTGCTACTTCATCGAAGCACAGGCTCCTCGGCGGGATTCTTCATCCGCGACTGAATGCGATTCCGCTCGTAAGAACCCCGAGGCAAAGGGGTTTTGTGCGGGCGAGTTCGGAGGATGCTGCACCACTACAGTCCAAAGTGACTCACAAAGTGTTCTTCGATATCAGCATTGGAAACCCGGTTGGGAAGCTTGCTGGGAGGGTTGTGATTGGACTGTACGGTGACGATGTTCCCCAAACTGCAGAGAATTTCCGTGCCCTCTGCACTGGAGAGAAGGGATTCGGCTATAAGGGCTCTACCTTCCACCGTGTAATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGAAAAAGTATATACGGGCGTACTTTCAAAGATGAGAATTTTAAACTTTCTCATGCTGGACCTGGAATTGTGAGCATGGCAAATGCAGGCCCCAACACAAATGGGAGTCAGTTTTTCATATGCACGGTGAAGACACCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAAGCTGATTGAATCACAGGAGACAGATCGGGGAGACCGTCCAAGAAAGAAGGTTACCATCAGTGACTCTGGTGAGCTTCCAATTGCTTGA 774 0.4871 MAATFTITTTPAATLSNVSGNRIGIRGLNPNPNPNAISCSATATSSKHRLLGGILHPRLNAIPLVRTPRQRGFVRASSEDAAPLQSKVTHKVFFDISIGNPVGKLAGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHAGPGIVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPRKKVTISDSGELPIA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272661g00004 257 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 137 154 IPR020892 GO:0003755|GO:0006457
Stsc272661g00004 257 MobiDBLite consensus disorder prediction 233 257 - -
Stsc272661g00004 257 FunFam Peptidyl-prolyl cis-trans isomerase 77 257 - -
Stsc272661g00004 257 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 106 250 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 Gene3D - 76 256 IPR029000 -
Stsc272661g00004 257 SUPERFAMILY Cyclophilin-like 84 254 IPR029000 -
Stsc272661g00004 257 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 93 253 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 213 228 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 212 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 154 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Stsc272661g00004 257 MobiDBLite consensus disorder prediction 233 248 - -
Stsc272661g00004 257 CDD cyclophilin_ABH_like 90 252 - -
Stsc272661g00004 257 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 91 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272661g00004 Stsc-Chr272661 15881 18961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272661g00004 62 248 U-box Gene Family AT5G67530 40.426 4.81e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272661g00004 K03768 - tcc:18608923 357.836