Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272657g00001 ATGGAGCTTTCAAATCAGGCACTGGAGGAAGGATCCTCACAGAATCAGAAGAAGATGGGGAGAGGCAAGATAGAGATCAAGCGGATCGAGAACACGACCAACCGGCAAGTCACCTTCTGCAAGCGCCGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCCGTCCTCTGTGATGCCGAGGTGGCTCTCGTCGTCTTCTCCAGCCGCGGTCGCCTCTACGAGTATGCCAACAACAGTGTTAGAGGAACTATTGAAAGGTACAAGAAAGCATGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCGAAATTAAGAAGGCAGATTCGTGACATTCAGAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCAAGAAAGCATGAAACTTTGTTTGCTGATGTGGAGTTCATGCAAAAACGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCCAAGATAGCTGAACATGAGAGAGCACAACAGCAACATGAGCAGCAGCAGCAACAAGAACAGCAGAATTTGATTCAAGGGAATATGTGTGAAGATCAGTCCATGGCTTCACAAACATATGACAGGAATTTCTTCCCAGTAAATCTATTAGATTCCAATAATAATCATCAATATTCACGCCAAGATCACACTGCACTGCAACTTGTGTAA 768 0.4414 MELSNQALEEGSSQNQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQHEQQQQQEQQNLIQGNMCEDQSMASQTYDRNFFPVNLLDSNNNHQYSRQDHTALQLV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272657g00001 255 SUPERFAMILY SRF-like 20 97 IPR036879 GO:0003677|GO:0046983
Stsc272657g00001 255 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Stsc272657g00001 255 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Stsc272657g00001 255 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Stsc272657g00001 255 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Stsc272657g00001 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Stsc272657g00001 255 Coils Coil 108 128 - -
Stsc272657g00001 255 Gene3D - 31 114 IPR036879 GO:0003677|GO:0046983
Stsc272657g00001 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 208 - -
Stsc272657g00001 255 MobiDBLite consensus disorder prediction 1 19 - -
Stsc272657g00001 255 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Stsc272657g00001 255 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272657g00001 255 Coils Coil 139 159 - -
Stsc272657g00001 255 Coils Coil 178 209 - -
Stsc272657g00001 255 CDD MADS_MEF2_like 20 96 IPR033896 GO:0000977|GO:0045944
Stsc272657g00001 255 Pfam K-box region 103 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272657g00001 255 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272657g00001 255 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Stsc272657g00001 255 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272657g00001 Stsc-Chr272657 423 6002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272657g00001 7 255 MADS-box Gene Family AT3G58780 66.926 3.79e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc272657g00001 K-box 7.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272657g00001 K09264 - gmx:100782733 384.03