Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272653g00003 ATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCATCTGTTGCAATGAATGGCCCCCAAGATGAGAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCATTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCCGACCTGGAAGCTGAGAGTGGCCCTGTCGATAACGTGCAGGAATTTGCTTCACTGAGATGTGGCGAATCATATCCAAGTGGAACAATGACACAAGAGGTTGAAACGTCCATGCGTTTGGGGCAGATATCAGTTATGCATGAGAGTCATGCTGGAGCATTACCCGTGGCTGGTAGCAAAAATGGTGAGACAAGCACAACCAATGGCAAGGATGGTGATACAGAGCATTTTAGGAGTGCTACCATCAGTGGTGAGGCTCATGACAATCACTGTGTTCAAATTAGCTGTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATAATCGTCCAAACTGCAGTCTCAAAGCTCCAACAGTTAATTGCACAGGAAAGTTCGATGTCATTCCGCAGTTGGATCTTTCCCTAAGAAGATCTCATCCCAGCAACTGTGAGAATGAACTCGCTGAAGAAAGGAATACCCTCATGCATTCTAATGCTTCAGCTTTCAAGCGGTATAGAAACAGGCAGTTTCAAGCCTCTCCTGCAATTTTGAACTTCTCTGATCAACAAAGAGAGCAGAGAACAAATTGCGAGAAAAGCATCTCCCATTTTGCTACTGGCTGTAATTCAGATAGTTCAACACCTAGTGTGCAAAGAAATCTTGTATCTCCAACTACACCGCAATCAAAAGAATCTGAAGCAGCAACTTCACACTCGCAACAGCAAGGGCATTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTATGCACAGCCTATGGTTCTGTACTTCCTCCGATGTTTCGCACACAATCGGGTCCACCATCGGTGCCTAGCCCCAATTCAGTCGTGCTTCTTGAACCAGCCTTTCAAGTAAATGCATTTTATCGGTCAGATGTTAAAGACAATAGCTCAGAGCAGGTTTATGAATCTCATGGTTCCGGTGGAAAAAGTGCTCCAAACAACATTATCTCAAGACCGGAACAGAAGCCAGAACATGCTGAGGATCAAAGACATATCTCTCCTGCAACTGATCAAAGTGGATCTGGTAGCTTCTGTAACGGAAATGCGAGCCATCTTAATAGCATGGGGTACGGAAGCAACTGCGGAAGTAGCAACATTGTTGATCAGGTCCCAATTGTCAGAGCAGCTTCAGACGGTAAGAATGAAGACTTCGCAAACAATGCGAGCTCTCATCGATCTATCCAAAGAGAAGCGGCTCTAAACAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATACGAGAGCAGAAAGAAATTAGCAGAACAGCGCCCAAGGGTGAAAGGTCAATTCGTTCGTCAAGTCCAGCCGGATGCTCTTGCTGCAGAAAAAGATGGCAAAGAATATGATCTTTAG 1641 0.4455 MLRGAADYLVKPLRKNELRNLWQHVWRRQSSSVAMNGPQDESVAQQKVEATAENNDASIHSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNVQEFASLRCGESYPSGTMTQEVETSMRLGQISVMHESHAGALPVAGSKNGETSTTNGKDGDTEHFRSATISGEAHDNHCVQISCSKEAIDLIGAFHNRPNCSLKAPTVNCTGKFDVIPQLDLSLRRSHPSNCENELAEERNTLMHSNASAFKRYRNRQFQASPAILNFSDQQREQRTNCEKSISHFATGCNSDSSTPSVQRNLVSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPSVPSPNSVVLLEPAFQVNAFYRSDVKDNSSEQVYESHGSGGKSAPNNIISRPEQKPEHAEDQRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIVRAASDGKNEDFANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALAAEKDGKEYDL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272653g00003 546 MobiDBLite consensus disorder prediction 386 435 - -
Stsc272653g00003 546 Pfam CCT motif 487 529 IPR010402 GO:0005515
Stsc272653g00003 546 MobiDBLite consensus disorder prediction 386 408 - -
Stsc272653g00003 546 ProSiteProfiles CCT domain profile. 487 529 IPR010402 GO:0005515
Stsc272653g00003 546 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 204 540 IPR045281 GO:0009909
Stsc272653g00003 546 ProSiteProfiles Response regulatory domain profile. 1 26 IPR001789 GO:0000160
Stsc272653g00003 546 MobiDBLite consensus disorder prediction 289 326 - -
Stsc272653g00003 546 MobiDBLite consensus disorder prediction 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272653g00003 Stsc-Chr272653 21157 24682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272653g00003 145 531 Response Regulator Gene Family AT5G24470 29.245 3.62e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc272653g00003 CCT 8.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272653g00003 K12130 - gmx:100777119 802.742