Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272652g00001 ATGGCGCCGAGCGTCCGAGACATCCAGCTTACTCCCGCCGGTAAAACCTCCCTCGCCGCCGACGATGACGACGATTCCGGCGACCTCGAAGATGTTCGCCTTCTTGACTCCTACGATAAGAACGATGTTGAAGCAGCATCAACGAAGCGGATTCAGGTCAGAGTCACCGGCATGACCTGCGCCGCATGTTCAAATTCCGTTGAATCCGCTCTCATGTCCGTCGAAGGCGTCGTTTCCGCTTCTGTCGCACTTCTCCAGAACCGCGCCGACGTGGTTTTCAATCCGAGCCTCGTCAAGGATGAAGACATTAAGAATGCGATTGAAGATGCAGGTTTCGAAGCCGAGGTTTTGCCAGAACCTCAACAAAGCGCGACTGGAACGAAGCAAAATGGTGCTACTCTGGTTGGACAGTTCACGATCACGGGGATGACGTGTGCAGCGTGCGTGAACTCCGTGGAAGGGATCCTCAGAGACCTCAGTGGTGTGAAGAAGGCTGTGGTGGCTTTGGCTACTTCGTTAGGTGAGGTTGAGTATGATCCTAATGTGATTAGCAAGGATGAGATTGTTGGTGCGATCGAAGATGCTGGGTTCGAGGCTTCGTTTGTGCAGAGCAATGAGCAGGACAAGGTGGTGCTTGGTGTTGTTGGTGTGTACAGTTTGGGTGATGCTCAGGCTCTGGAAGGCATGCTCAGTGGGATGAAAGGTGTGAGGCAGTTCCGATTCGATATTGTGTCGAATGAGCTGGATGTTGTGTTTGATCCTCAAGTTATTAGGCCTCGATCACTTGTTGATGGGATCCAGCTTGGGAGTAAAGGGAAGTTCAGGTTGAATGTTAGGAACCCTTATGCCAGAATGACTTCTAAAGATGGTGCCGAGAGCTCGGCTATGTTTCGGCTTTTTTCTTCCAGCCTGTTTCTTAGTGTTCCTCTCTTCTTCATGGGGGTAGTTTGCCCTCACATACCATTCATATACTCCTTATTACTCTGGAGATGTGGGCCTTTCCTCATGGGAACTACAGCCTCCTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCCGTTACTGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCCATTAAGAAGTTAGTGGAACTTGCTCCTGCAACAGCTTTATTGGTTGTAAAAGATAAAGATGGTAAATTAATTGAGGAAAGGGAAATAGACTCCTTACTCATTGAACCTGGTGATACATTAAAAGTTCTTCCTGGTACAAAGATTCCAGCTGATGGTATTGTTAAGTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCTGTACCTGTTTTGAAGGAGCTCAATGCATCAGTTATTGGAGGTACAATCAATTCACATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTACGTATACTGCTGGGGCTCTTGA 1575 0.4717 MAPSVRDIQLTPAGKTSLAADDDDDSGDLEDVRLLDSYDKNDVEAASTKRIQVRVTGMTCAACSNSVESALMSVEGVVSASVALLQNRADVVFNPSLVKDEDIKNAIEDAGFEAEVLPEPQQSATGTKQNGATLVGQFTITGMTCAACVNSVEGILRDLSGVKKAVVALATSLGEVEYDPNVISKDEIVGAIEDAGFEASFVQSNEQDKVVLGVVGVYSLGDAQALEGMLSGMKGVRQFRFDIVSNELDVVFDPQVIRPRSLVDGIQLGSKGKFRLNVRNPYARMTSKDGAESSAMFRLFSSSLFLSVPLFFMGVVCPHIPFIYSLLLWRCGPFLMGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKDGKLIEEREIDSLLIEPGDTLKVLPGTKIPADGIVKWGSSYVNESMVTGESVPVLKELNASVIGGTINSHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVYCWGS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272652g00001 524 FunFam Copper-exporting P-type ATPase A 133 202 - -
Stsc272652g00001 524 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872
Stsc272652g00001 524 ProSiteProfiles Heavy-metal-associated domain profile. 49 115 IPR006121 GO:0046872
Stsc272652g00001 524 FunFam Copper-exporting P-type ATPase A 47 117 - -
Stsc272652g00001 524 FunFam Copper-transporting ATPase 1, putative 384 506 - -
Stsc272652g00001 524 SUPERFAMILY HMA, heavy metal-associated domain 205 266 IPR036163 GO:0046872
Stsc272652g00001 524 Gene3D - 48 119 - -
Stsc272652g00001 524 PRINTS Copper-transporting ATPase 1 signature 50 75 - -
Stsc272652g00001 524 PRINTS Copper-transporting ATPase 1 signature 105 125 - -
Stsc272652g00001 524 PRINTS Copper-transporting ATPase 1 signature 76 99 - -
Stsc272652g00001 524 Pfam E1-E2 ATPase 398 518 - -
Stsc272652g00001 524 Gene3D - 384 506 - -
Stsc272652g00001 524 ProSitePatterns Heavy-metal-associated domain. 55 85 IPR017969 GO:0046872
Stsc272652g00001 524 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 336 519 - -
Stsc272652g00001 524 CDD HMA 137 200 IPR006121 GO:0046872
Stsc272652g00001 524 Gene3D - 136 201 - -
Stsc272652g00001 524 SUPERFAMILY HMA, heavy metal-associated domain 136 206 IPR036163 GO:0046872
Stsc272652g00001 524 CDD HMA 52 115 IPR006121 GO:0046872
Stsc272652g00001 524 ProSiteProfiles Heavy-metal-associated domain profile. 134 200 IPR006121 GO:0046872
Stsc272652g00001 524 NCBIfam copper ion binding protein 137 199 IPR006122 GO:0005507
Stsc272652g00001 524 NCBIfam copper ion binding protein 51 114 IPR006122 GO:0005507
Stsc272652g00001 524 SUPERFAMILY Calcium ATPase, transduction domain A 416 502 IPR008250 -
Stsc272652g00001 524 MobiDBLite consensus disorder prediction 1 28 - -
Stsc272652g00001 524 Pfam Heavy-metal-associated domain 53 113 IPR006121 GO:0046872
Stsc272652g00001 524 Pfam Heavy-metal-associated domain 138 198 IPR006121 GO:0046872
Stsc272652g00001 524 SUPERFAMILY HMA, heavy metal-associated domain 47 120 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272652g00001 Stsc-Chr272652 6480 10122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272652g00001 1 519 Primary Pumps ATPases AT5G44790 64.510 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272652g00001 K17686 - gmx:100798164 788.875