Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272648g00003 ATGGCTGTGGTGAGTCCTATGAGTCCTGCTATGCCTACAACTCTGCACCAGGTCTATTCACCAAGGCCTCTTCATGGAAGTGAGGTTCCGGGGATCATGACAATCATGAGAGAAGCTTCTTCTTCAGAGGCACCTACTCCAAATTTGGTTGATGACATTATTCATGTTGCTGTGGCTAAAGATGTGAAAGATAGCAGGTTGAATCTGATTTGGGCTATTCAGAATTCTGGAGGAAAGAAGATTTGCATCCTTTATGTTCATGTGCCCGCAGTTACAATCCCCTTGGCCCCAATGGGTGTTAATTTACCACAAAGTACAGCAGCAGAGCATAAAGTTCAAGAGTTTCGCGAGAACGAAAAGCAAGCCATGCATAAGATTCTGGATACCTATCTTCTTATCTGCAAAAGGATGGGGGTAAAAGCAGAGAAACTGCATATTGAAATGGATTGCATTGAAAAAGGGATTGTACAACTCATTTGCCAGCATAATATCCAGAATCTCGTCATGGGAGCAGCCTCCGATAAGTACCATTCAAGGAGAATGACAGACCTCAGGTCTAAGAAAGCCATTTATGTAAGCGAAAATGCTCCGGCTCATTGTCATATACAGTTCATCTGCAAAGGCTACCTCATACACACAAGGAATCTCAGTTTGGATGGAGGCAATATAGAAATCAGATCTCCTTTGACACCTCAAACGCCTCACTCTGATGGCGAGCCTTCAGCACATTCAAGATCTCATTCTGTTTCACTTGGACAAAATCAATGGATGAAAGCACAGCAGTTATATCGCCGAGTAAGATCTGTTAACGAAAGAAATGGAGGTGGAGGGAGAATTATGTCTCTTTCTTCTCCAATAAGGTTTCTCATGCAACACAATAGGATCAGTAGAGAAGAAACTTCTAATGACTCAAGGCAAGCAAGTCCTTTGAATTTCATTAGTGAGAGAACTGAGAATGCATCCGCCTTGAATTCGAGTAGTCCTAATGTGATTGAAGCAGATCTTCATCATTCATTATCTCCTAACAGGCTGGATGGTGAAGTGGATGAGAATCTCTATGATCAACTCCAACAGGCCATGGCTGAAGCTGAGAATGCAAGGCAGGATGCTTATCAAGAGAGTGTTAGGCGCAGGAATGCCGAAAGGAATGCCATTGAAGCCATTCGCAGGGCTAAAGCTGCTGAAATGAGGTATGAAGAAGAGGTGAAATTGAGGAAAGAATTAGAGGAAGCAATAAAGAGAGAAAAGGAAGAAATAGATTGTATGAAGATCCAAAGAGAGAAGCTTAATGAAGAACTCCAACATGCCTTGCATAACAATTCATTACTAGAAAGCAAAATTGCATCAACTCAACTGATGTTAGATGAGTTAGATCAGAAGAACAAATCTGATATGGATACATTAGAAAAGTACAAGCAAGAACGCGAGGATTTGCAGACGCAGCGCGATAATGCCTTGAAAGAAGCTGAGGATTTGAGGAGAGAAAAACAACAAGGAGAGGCCTCAACCTCACATGTCTTTCAACTCTTCTTAGAATTTTCTTTTGCTGAGATTCAAGAAGCTACCAACAACTTCAGTCCCTCCCAAAAGATTGGAGAAGGCGGATACGGATCTATATATAAAGGTATCCTACGCCAAACCGAGGTAGCTGTAAAAATGTTAAGCCCGGACAGCAGGCAAGGACCAAAAGAGTTTCAACAGGAGGTTGAGGTACTAAGCAAGTTAAGGCATCCCAATCTGATCACACTGATAGGAACCTGCCCAGAATCTTGGACTCTTGTTTATGAGTATTTATCCAATGGAAGCCTAGAAGATCGTCTCAGCTGCGAGGATAACACGCCACCATTATCATGGCAAACTAGAATCCGCATTGCTGCAGAAGTGTGTTCTACTCTAGTATGTCTCCATTCTAATAAACCTCACAGCATAGTGCATGGAGATTTAAAACCAGCCAACATACTCCTTGATTCTAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCTCGCGACTACTATCTTGTCGCGAGGGTAGTACTACACAATTTTGGATAACTGATCCAAAAGGAACTTTTGCATATATGGACCCTGAAATCTTTGCTTCAGGGGAACTTACACCAAAATCAGATGTTTATTCTTTTGGAATCATATTGCTAAGATTGTTGACTGGTAAACCAGCTGTGGGAATAGCAAAGGTAGTGGAGTCTGCTTCACATGCTGGAAAGTTGAATTCCCTCTTGGATCCCTTGGCTGGAGACTGGCCGATAGCCCTGGCCGAAAAGCTTGCTCGCTTGGCTTTGAGGTGCTGCGAAATGGAGCGAAAGAACCGTCCGGATCTTCATTTGGAAGTATGGAGAATACTTGAACCTATGAAGGCTTCTTTGAGTGGAGAAAACATATTAGGACTTGATTCTCAAGGACTTTACCAGCCCCCTCCTTATTTCATTTGTCCAATCTTCAAGGAAGTGATGAGAGATCCTCAAGTGGCAGCAGATGGTCATACTTATGAAGCCGAGGCTATACAAGGATGGCTGGACAGCGGTCGCGACACTTCGCCGGTGACAAAATCTAAGCTGGTAGTCCAAAATCTTGTTCCAAACCATGCTCTCCGCTCTGCAATCCAAGACTGGCTTGAAAGTTGA 2640 0.4299 MAVVSPMSPAMPTTLHQVYSPRPLHGSEVPGIMTIMREASSSEAPTPNLVDDIIHVAVAKDVKDSRLNLIWAIQNSGGKKICILYVHVPAVTIPLAPMGVNLPQSTAAEHKVQEFRENEKQAMHKILDTYLLICKRMGVKAEKLHIEMDCIEKGIVQLICQHNIQNLVMGAASDKYHSRRMTDLRSKKAIYVSENAPAHCHIQFICKGYLIHTRNLSLDGGNIEIRSPLTPQTPHSDGEPSAHSRSHSVSLGQNQWMKAQQLYRRVRSVNERNGGGGRIMSLSSPIRFLMQHNRISREETSNDSRQASPLNFISERTENASALNSSSPNVIEADLHHSLSPNRLDGEVDENLYDQLQQAMAEAENARQDAYQESVRRRNAERNAIEAIRRAKAAEMRYEEEVKLRKELEEAIKREKEEIDCMKIQREKLNEELQHALHNNSLLESKIASTQLMLDELDQKNKSDMDTLEKYKQEREDLQTQRDNALKEAEDLRREKQQGEASTSHVFQLFLEFSFAEIQEATNNFSPSQKIGEGGYGSIYKGILRQTEVAVKMLSPDSRQGPKEFQQEVEVLSKLRHPNLITLIGTCPESWTLVYEYLSNGSLEDRLSCEDNTPPLSWQTRIRIAAEVCSTLVCLHSNKPHSIVHGDLKPANILLDSNLVSKLSDFGISRLLSCREGSTTQFWITDPKGTFAYMDPEIFASGELTPKSDVYSFGIILLRLLTGKPAVGIAKVVESASHAGKLNSLLDPLAGDWPIALAEKLARLALRCCEMERKNRPDLHLEVWRILEPMKASLSGENILGLDSQGLYQPPPYFICPIFKEVMRDPQVAADGHTYEAEAIQGWLDSGRDTSPVTKSKLVVQNLVPNHALRSAIQDWLES 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272648g00003 879 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Stsc272648g00003 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Stsc272648g00003 879 Pfam U-box domain 811 878 IPR003613 GO:0004842|GO:0016567
Stsc272648g00003 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Stsc272648g00003 879 MobiDBLite consensus disorder prediction 474 499 - -
Stsc272648g00003 879 PANTHER OS02G0152300 PROTEIN 54 875 - -
Stsc272648g00003 879 Gene3D Phosphorylase Kinase; domain 1 510 597 - -
Stsc272648g00003 879 ProSiteProfiles Protein kinase domain profile. 525 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272648g00003 879 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 65 173 - -
Stsc272648g00003 879 SMART serkin_6 525 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272648g00003 879 Coils Coil 346 373 - -
Stsc272648g00003 879 SUPERFAMILY RING/U-box 805 878 - -
Stsc272648g00003 879 SMART Ubox_2 813 876 IPR003613 GO:0004842|GO:0016567
Stsc272648g00003 879 Gene3D Transferase(Phosphotransferase) domain 1 598 798 - -
Stsc272648g00003 879 CDD STK_N 53 208 - -
Stsc272648g00003 879 Pfam Protein kinase domain 527 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272648g00003 879 FunFam receptor-like protein kinase FERONIA 487 597 - -
Stsc272648g00003 879 Coils Coil 377 502 - -
Stsc272648g00003 879 SUPERFAMILY Protein kinase-like (PK-like) 503 780 IPR011009 -
Stsc272648g00003 879 ProSiteProfiles U-box domain profile. 809 879 IPR003613 GO:0004842|GO:0016567
Stsc272648g00003 879 MobiDBLite consensus disorder prediction 226 251 - -
Stsc272648g00003 879 CDD RING-Ubox_WDSUB1-like 811 866 - -
Stsc272648g00003 879 Gene3D HUPs 50 173 IPR014729 -
Stsc272648g00003 879 MobiDBLite consensus disorder prediction 224 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272648g00003 Stsc-Chr272648 20107 23952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272648g00003 1 878 U-box Gene Family AT2G45910 51.253 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc272648g00003 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272648g00003 - - adu:107472426 1378.62