Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272645g00004 ATGGTGAGAGCTATGTCTCTTCCTAATAAGATGCTGGCAATGTTCCTCTGTTTGGGAATTTTGTGGGCTGAGATTCATCTCATTTCTTCTTATACAGATCCTCAAGATGCTGCTGTACTCAGATCTTTGAAGGATATATGGGTAAATACACCACCAAGCTGGGATAAATCAGATGACCCTTGTGGAGCACCATGGGAAGGAGTTACCTGCAACAAATCAAGGGTTACCTCATTGGGACTTTCAACCATGGGCCTCAAAGGTAAACTAAGTGGAGACATTGGTGGACTAACAGAACTCAGATCCTTGGACTTGTCATTCAACAAGGGTTTAACAGGTCCTCTATCTCCACAAATAGGAGAACTAAGCAACCTGAATATCCTCATCTTGGCTGGTTGCAGCTTCAGTGGCAGCATTCCAGATGCATTGGGAAATCTTTCAGAGCTATCTTTCTTGGCCTTAAACTCAAACAACTTCACTGGGAAAATACCAGCTTCATTGGGAAAACTCTCCAAACTTTATTGGTTGGATTTAGCAGATAATGAACTCACAGGCCCTATTCCAGTTTCAACCTCCACCACCCCTGGTTTAGACCTTCTTCTAAAGGCTAAGCACTTCCATTTCAATAAGAACAAGCTTTCAGGTACCATTTCCCCCAAACTTTTCAGCTCTGACATGGTACTGATACACATATTATTTGATGGGAATAATTTATCTGGAACTATACCAACAACATTAGGACTAGTTCAGACACTTGAGGTTCTTCGACTTGATAGAAATTCTCTGACAGGAGAGGTTCCTACAAATCTCAATAACCTTACAAACATCAATGAATTGAATTTAGCACACAATAATTTGAAAGGTCCTTTGCCAGACTTAAGTCACATGGATACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCCGAACCGCCGATTTGGTTCTCGTCTCTACCATCACTCACCACTCTTGTTATGGAGTTTGGATCCTTGGAAGGTCCTCTTCCATCTAAGCTCTTCAGCATTCCTCAAATTCAACAAGTGAAACTAAGGAACAATGGATTGAACAATACACTAGATTTGGGTGACAACATTTGTCCCCAATTGCAGCTTGTTGATTTGCAAGACAACCAGATTTCCTCAGTAACGTTCCGTTCGCAATACAAAAACACATTGATCCTCATAGGAAATCCAGTGTGCAGTGTTCTCTCAAACACAAACTACTGTCAACTTCAGCAGCAGCCGAAGAAGCCTTACTCTACAAGCTTGGCGAATTGCGGCGGCAAATCTTGCCCGCCGGATCAAAAGCTTAGCCCTCAAAGCTGTGAATGTGCATATCCTTATGAAGGGATGTTGTACTTCAGAGGTCCCTTGTTTAGAGAGCTCTCAAATGTTAACATTTTCCATTCACTTGAGATGAGTTTGTGGGTGAAGTTGGATCTAACACCTGGCTCAGTTTCTTTGCAAAACCCTTTCTTCAATAGTGATGACTATCTTCAAGTGCAGCTAGCTTTGTTCCCTCCATCAGGACAATATTTCAATAGGACTGAGGTTCAAAGAATTGGGTTTGATTTGACCAATCAAACTTATAAGCCTCCTAAGGAGTTTGGACCTTATTACTTCATTGCATTCCCTTATGCTTTCCCAGATTCCCACAAAGGAAACCCTCTTAGCACTGGTGCCATTGTTGGTATATCAGTTGGCTCATCAGTTCTGTTTCTGAGCCTCATAGCTTTGGCAGCATATGCAATCCTCCAAAAGAAGCGCGCGGAGCGAGCCATAGGATTAAGCAGACCTTTTGCATCTTGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCTCAATTAAAGGGTGCAAGATGGTTCTCCTATGATGAACTAAAAAAGAGCACTAGTAATTTCTCTGAAAGCAATGAGTTAGGCTTTGGTGGTTATGGCAAGGTGTACAAAGGGGTGCTTCCTGATGGAAAAATCGTCGCGATCAAGCGAGCTCAGCAAGGATCAATGCAAGGAGGCATAGAGTTCAAGACTGAAATCGAGTTGCTTTCGAGAGTTCATCACAAGAACCTCGTTGGCCTCGTCGGATTTTGCTTCGAACAAGGAGAGCAGATGTTGGTCTATGAGTTCATGCCCAATGGAACACTTAGAGAGAGTTTGTCAGGAAGATCTGACATTCATCTTGATTGGAAGAGGAGACTTCGCATCGCCCTTGGCTCGGCCAGAGGACTCGCTTACCTTCATGAACTTGCCAACCCTCCAATAATCCACAGAGATGTGAAATCCACTAACATCTTATTAGATGAAAATTTGACAGCAAAGGGCTACTTGGACCCTGAATACTACATGACCCAACAACTAACCGAGAAAAGTGACGTGTATAGCTTCGGAGTGGTTATGCTAGAGCTCATAAGTTCGAGGCAGCCCATTGAAAAGGGTAAGTACATCGTCCGGGAAGCTCGAACGGCGTTCAACCGGCACGACGAAGAACACTACGGAATGAGTGAACTAATGGATCCAATTGTGAGGAACACACCAAACCTAATAGGGTTTGGTAGGTTCCTAGAGTTGACTTTGCAATGTGTTGAGGAATCAGCCGTTGACCGTCCAACAATGAGTGAGGTTGTTAAGGCACTTGAGACAATATTGCAAAATGATGGAATGAACACAAACTCAACCTCTGCTTCTTCATCTGCCACTGATTTTGGAGCAACCAAGGGTGGTGCAATGATGAAACATCCTTATATTGATACCTCAAATTTTGCTAAGAATAAGGATAATGTCAGTGACAACAACAGTGCCTTTGACTACAGTGGAGGATACACAATTTCAGCAAAAGTTGAACCAAAATAG 2856 0.43 MVRAMSLPNKMLAMFLCLGILWAEIHLISSYTDPQDAAVLRSLKDIWVNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGGLTELRSLDLSFNKGLTGPLSPQIGELSNLNILILAGCSFSGSIPDALGNLSELSFLALNSNNFTGKIPASLGKLSKLYWLDLADNELTGPIPVSTSTTPGLDLLLKAKHFHFNKNKLSGTISPKLFSSDMVLIHILFDGNNLSGTIPTTLGLVQTLEVLRLDRNSLTGEVPTNLNNLTNINELNLAHNNLKGPLPDLSHMDTLNYVDLSNNSFDPSEPPIWFSSLPSLTTLVMEFGSLEGPLPSKLFSIPQIQQVKLRNNGLNNTLDLGDNICPQLQLVDLQDNQISSVTFRSQYKNTLILIGNPVCSVLSNTNYCQLQQQPKKPYSTSLANCGGKSCPPDQKLSPQSCECAYPYEGMLYFRGPLFRELSNVNIFHSLEMSLWVKLDLTPGSVSLQNPFFNSDDYLQVQLALFPPSGQYFNRTEVQRIGFDLTNQTYKPPKEFGPYYFIAFPYAFPDSHKGNPLSTGAIVGISVGSSVLFLSLIALAAYAILQKKRAERAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDELKKSTSNFSESNELGFGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGIEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGRSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKGYLDPEYYMTQQLTEKSDVYSFGVVMLELISSRQPIEKGKYIVREARTAFNRHDEEHYGMSELMDPIVRNTPNLIGFGRFLELTLQCVEESAVDRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGATKGGAMMKHPYIDTSNFAKNKDNVSDNNSAFDYSGGYTISAKVEPK 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272645g00004 951 Gene3D Transferase(Phosphotransferase) domain 1 712 774 - -
Stsc272645g00004 951 SMART serkin_6 636 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272645g00004 951 SUPERFAMILY L domain-like 42 413 - -
Stsc272645g00004 951 PANTHER RECEPTOR-LIKE PROTEIN 55 41 883 - -
Stsc272645g00004 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Stsc272645g00004 951 Gene3D Ribonuclease Inhibitor 193 291 IPR032675 -
Stsc272645g00004 951 Gene3D Ribonuclease Inhibitor 292 437 IPR032675 -
Stsc272645g00004 951 FunFam Leucine-rich repeat protein kinase family protein 604 711 - -
Stsc272645g00004 951 FunFam Predicted protein 194 414 - -
Stsc272645g00004 951 FunFam Leucine-rich repeat family protein 35 191 - -
Stsc272645g00004 951 Gene3D Phosphorylase Kinase; domain 1 610 711 - -
Stsc272645g00004 951 ProSiteProfiles Protein kinase domain profile. 636 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272645g00004 951 Gene3D Transferase(Phosphotransferase) domain 1 775 900 - -
Stsc272645g00004 951 ProSitePatterns Protein kinases ATP-binding region signature. 642 664 IPR017441 GO:0005524
Stsc272645g00004 951 Pfam Protein tyrosine and serine/threonine kinase 777 880 IPR001245 GO:0004672|GO:0006468
Stsc272645g00004 951 Pfam Protein tyrosine and serine/threonine kinase 639 775 IPR001245 GO:0004672|GO:0006468
Stsc272645g00004 951 Gene3D Ribonuclease Inhibitor 35 192 IPR032675 -
Stsc272645g00004 951 SUPERFAMILY Protein kinase-like (PK-like) 621 891 IPR011009 -
Stsc272645g00004 951 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272645g00004 Stsc-Chr272645 19352 26527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272645g00004 1 951 Receptor kinase-like Gene Family AT1G79620 67.857 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc272645g00004 PK_Tyr_Ser-Thr 2.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272645g00004 - - gmx:100792249 1603.19