Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272640g00003 ATGGCCACTTCCGCCGCCACCACAACTGCAGCAGCGCCGCGCCAGCTGTCGCAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCATCTTGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAAAGGCGCAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTCGCCATCGAGAACCCTCAAGATATCATTGTTCAATCTGCTAGGCCTTATGGTCAGAGGGCAGTCTTGAAATTTGCCCAATACACGGGTGCGAATGCCATAGCCGGAAGACACACTCCTGGTACCTTCACTAATCAGATGCAGACATCATATAATGAGCCACGCCTTCTCATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACCATTGCCTTCTGTGACACTGACAGTCCAATGCGCTATGTTGATGTTGGCATTCCTGCCAATAACAAGGGAAAGCACAGTATTGGTTGTCTCTTTTGGTTGTTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGACCGGGTCTTAAGTGGGACGTTATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGGCCAAACAACAAGAGGAGGAGGAATTACCTGCTGCCCCAGAATATGCCATTCAGGACTTTGGTGCGTCTGGCATTGCCAGCTTCCCTGCAGCTGATGGAGAATGGGGGTCTGCTCCAGCTGAACAACCCTGGCCTGAACCAGTTCCTCAACAGCCTATTGCAGCTGCTCCTGCTAACTGGGCCCCAGATGCTGCTGCAGGTGCAGGTGATTGGGAGCCAGTTCCAGCTCCACAGGCTGCCGTTCCTGCACCTGGAGGTGTTGCTCCCACTGGCTGGGACTAG 933 0.5102 MATSAATTTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGASGIASFPAADGEWGSAPAEQPWPEPVPQQPIAAAPANWAPDAAAGAGDWEPVPAPQAAVPAPGGVAPTGWD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272640g00003 310 Gene3D - 22 227 - -
Stsc272640g00003 310 Hamap 40S ribosomal protein SA [rps-0]. 10 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Stsc272640g00003 310 NCBIfam 30S ribosomal protein S2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc272640g00003 310 MobiDBLite consensus disorder prediction 248 310 - -
Stsc272640g00003 310 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Stsc272640g00003 310 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc272640g00003 310 PANTHER 40S RIBOSOMAL PROTEIN SA 12 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc272640g00003 310 FunFam 40S ribosomal protein SA 22 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272640g00003 Stsc-Chr272640 23088 25748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272640g00003 5 302 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 70.903 5.22e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272640g00003 K02998 - gmx:100786575 444.891