Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272637g00001 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTAGAGTTAGACCTCTCTCACAAGAACAGTAACAGTGAAGAAGCTTCTTCAGTTGATTTGTGCCTCGGCAGCCAGGCCTCTGATTTGGAAAATCCCTTGGTGAGTGGTGACACTAACAAGGCAAATACAGAAGAATCTTTACAAAGAACAGTGTCTTCGTCGTCGTCGTCTTCGAAGAGATCCCGTCTGCAAAATGGGTCACAGAACATGTCTTGCTTGGTTGATGGATGCAGCTCTGACCTCAGTGATTGCAGGGAGTATCATAGAAGGCATAGGGTCTGTGAGAAGCACTCAAAAACCCCGGTTGTGTCGGTTGGGGGAAAGCAACAAAGGTTTTGCCAACAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTCGAAAGCGTCTTGATGGGCATAACAGGCGCCGGAGGAAGCCTCAGCCACCGTCTTTCCTCATGAGTTCTGAGAAATTCATGTACAATTACAAAGGACCTAGGATCCTGCATTTTGGTAACCCTCAGCCATATGCAAACCCTATTGTGAGGAACATGTGGCCTGCTCCATCCATATCCGGAGCCGGATCCGACTATGATCATCATCGGTTTCTATATCGAATCGACAAACACAGGCAGGACAAGGAGCTTCTACTCTGGCAAGACAATGTCCCAAAATCATGCAATGGCATCCTTGAATCCGCAGCAATGCCGGGAACTCCAATCCACCAGCCTGTCTGCGGCAGCACCATTGCTCCCTCAACAACTGCAAAGCTCGGCCTTAAGAAGCCGCTTTCTGATGGCAAACCTGCGTCTTTAGACTCAGGTTGTGCTCTCTATCTTCTGTCAACATTACAAACACAAATGCAGTCTCCGTCCCCTGGGACCGAGCAATTCGATGCTGCGGCTGATAAGCCTAGTGGCCATAAAGTACTTGTTCTTGATGCTAACTCAACCAACCTTCATTGCAACGGGGTGCTGCAAATGGGGCATGATGGATTGGTTGAAAATGGTGACTCACTTGCACTTCCATTTTTTTGGGAGTAG 1083 0.4811 MDWDWKEFAWDPSGLELDLSHKNSNSEEASSVDLCLGSQASDLENPLVSGDTNKANTEESLQRTVSSSSSSSKRSRLQNGSQNMSCLVDGCSSDLSDCREYHRRHRVCEKHSKTPVVSVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSFLMSSEKFMYNYKGPRILHFGNPQPYANPIVRNMWPAPSISGAGSDYDHHRFLYRIDKHRQDKELLLWQDNVPKSCNGILESAAMPGTPIHQPVCGSTIAPSTTAKLGLKKPLSDGKPASLDSGCALYLLSTLQTQMQSPSPGTEQFDAAADKPSGHKVLVLDANSTNLHCNGVLQMGHDGLVENGDSLALPFFWE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272637g00001 360 FunFam Squamosa promoter-binding-like protein 14 77 147 - -
Stsc272637g00001 360 MobiDBLite consensus disorder prediction 43 79 - -
Stsc272637g00001 360 Gene3D - 77 147 IPR036893 GO:0003677|GO:0005634
Stsc272637g00001 360 Pfam SBP domain 86 159 IPR004333 GO:0003677
Stsc272637g00001 360 ProSiteProfiles Zinc finger SBP-type profile. 83 160 IPR004333 GO:0003677
Stsc272637g00001 360 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 316 IPR044817 GO:0003677
Stsc272637g00001 360 SUPERFAMILY SBT domain 84 165 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272637g00001 Stsc-Chr272637 13463 16033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272637g00001 86 211 SBP-box Gene Family AT5G50670 54.545 4.22e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc272637g00001 SBP 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272637g00001 - - gmx:100798317 460.685