Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272636g00003 ATGGATAGTCTCCTCAGCATGAAGGATTTCGAATTAGAGCCCAAGAATCCCTCCCCCGAAGCCCTCCGCCGCTGGAGGTCCGCCGTTAGCTTCGTCAAGAACCGCCGCCGCCGGTTCCGCATGGTCGCCGACCTCGACAAACGCGACCAAGCTCAACAGATTAAGCAGGGCATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTCATTGATGCGGGTAGTCGAGTTGAATATAAGCTGCCAGAAGAGGCAAGACAAGCTGGTTTTGGCATTCATCCTGATGAAATCGCAGCTATTGTTCGTGGACATGATTATAAGAACTTGATGAATATTGGTGGAGTTGAAGCTATTACAAGGAAACTTGCAGTCTCAGCAGATGAAGGTATCAGTGAAGAGAGTATAGAATCCAGACAAACGGTTTATGGAGTCAACCGCTATACAGAGAAACCTTCTAGAAGCTTCCTGATGTTTGTGTGGGATGCACTTCAGGACCTAACTCTAATCATTCTTATAGTTTGTGCTATAGTTTCTATTGGTGTAGGGATTGCTACTGAAGGGTTTCCAAAAGGAACATATGATGGTGTAGGAATCATACTTAGTATTTTTTTGGTTGTCATTGTTACTGCTGTCAGTGACTACCAGCAATCCCTACAGTTCAGAGATTTAGACAAAGAGAAAAAGAAGATCTTTGTTCATGTCACCAGAGGTGGGAAAAGGCAGAAGATCTCAATATATGATATAGTAGTTGGTGACATTGTTCATTTGTCCACCGGTGATCAAGTTCCGGCTGATGGGCTGTATATATCAGGATACTTTTTACTTATAGACGAATCGAGTTTGTCAGGTGAGAGTGAACCTGTAAATGTGAATGAAGAAAAGCCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACGACGGTTGGCATGAGGACTGAATGGGGGAAATTGATGGAAACTCTAAATGAAGGTGGAGACGATGAGACACCATTGCAGGTGAAATTGAATGGAGTTGCTACAATTATTGGTAAAATTGGTTTAACTTTTGCATGCCTCACATTCGTGGTGCTGACAATCAGATTTCTTGTTGAGAAAGCAATTAATGGCGAGTTTTCAAGTTGGTCTTCCAATGATGCATTGAAGCTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTGGTTGCGGTTCCTGAAGGACTGCCATTGGCTGTGACACTGAGTCTTGCTTTCGCTATGAAAAAATTAATGAATGACAAGGCACTTGTGAGACACCTTTCTGCCTGTGAAACTATGGGTTCAAGTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCATATGGCTATATGTCAAAATACATCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACAATATTGGGAACTCCAACAGAATCAGCATTGATGGAATTTGGCTTGCTTTTAGGTGCTGATTTTGATGAACAACATAGAGTGTATAAGATACTTAAGGTTGAGCCTTTCAATTCAGTGAGGAAGAAGATGTCTGTGCTTGTGGCCCTTCCGGATGGAGGAGTCCGAGCTTTCTGCAAGGGTGCATCAGAAATAATATTAAAAATGTGCAACAAAATTATCAATAGCAATGGAGAAGTTGTTGACCTTCCAGAAGACCAAGCAAATAAGGTTACTGCTGTTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACCCTTTGTTTGGCTGTCAAAGATATAAATCAAAGTGAAGGGGATATTGATATTGATATCCCTGACAGTGGCTATACTCTGATAACCATAGTCGGAATTAAGGATCCTGTGCGCCCTGGTGTTAGGGAAGCTGTTCAAACTTGTTTAGCCGCCGGAGTAACTGTCCGCATGGTCACTGGTGATAACATTCATACAGCCAGAGCCATAGCTCAAGAATGTGGTATACTTACTGAGGGTGGTGTAGCCATTGAAGGACCGGAATTTCGTGACTTGTCTCTGGAGCAAATGAAGGATATCATACCAAGAATTCAGGTGATGGCACGATCCTTACCACTTGACAAGCATAAGCTAGTAACCAATTTGAGGAGTATGTTTGGTGAGGTTGTTGCTGTTACCGGTGATGGAACCAATGATGCTCCTGCATTGCATGAATCAGACATTGGACTTGCTATGGGCATAGCTGGAACAGAGGTTGCCAAAGAAAATGCTGATGTGATTATAATGGATGACAATTTCACCACCATTGTCAATGTTGCCAAATGGGGAAGAGCAGTATACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACAGTTAACATTGTTGCTCTGGTTATCAACTTTGTTTCTGCATGTATCACAGGATCTGCACCACTCACAGCTGTGCAGTTGCTTTGGGTTAACTTGATTATGGACACATTGGGTGCATTAGCCCTTGCTACTGAACCTCCAAATGAAGGACTTATGAAAAATCCCCCTGTTGCAAGGGGAGCAAGCTTTATAACCAAAACCATGTGGAGGAATATCATTGGTCAAAGCATATATCAGTTAATTGTGCTTGGACTTCTAACTTTTGATGGCCTGAATCTACTCAATATTACTGGTTCTGATGCAACTAAAGTTCTCAACACCTTGATATTCAACTCCTTTGTATTTTGTCAGGTGTTCAACGAGATAAACAGCAGAGACATCGAACGGATAAACGTATTCAGAGGCATGTTTGGGAGCTGGATATTCTTGGGGATAATTTTTGCCACGGCCGCGTTTCAAGTGATAATAGTTGAGTTCCTGGGAACTTTTGCCAGCACTGTCCCTCTAAACTGGCAAATGTGGTTGCTCAGTATTGCAATTGGTGCAGTTAGCATGCCTCTTGCTGCTATAGTCAAGTGCATTCCAATTGAAAGAGTTACTGCTATTAAGCATAATCATGATGGCTATGAAGCACTGCCTTCTGGTCCTGAACTTGCTTAG 3006 0.4218 MDSLLSMKDFELEPKNPSPEALRRWRSAVSFVKNRRRRFRMVADLDKRDQAQQIKQGIKEKIRIALYVQKAALQFIDAGSRVEYKLPEEARQAGFGIHPDEIAAIVRGHDYKNLMNIGGVEAITRKLAVSADEGISEESIESRQTVYGVNRYTEKPSRSFLMFVWDALQDLTLIILIVCAIVSIGVGIATEGFPKGTYDGVGIILSIFLVVIVTAVSDYQQSLQFRDLDKEKKKIFVHVTRGGKRQKISIYDIVVGDIVHLSTGDQVPADGLYISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLTFACLTFVVLTIRFLVEKAINGEFSSWSSNDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSSSCICTDKTGTLTTNHMAICQNTSAEVVKDKDGNNTILGTPTESALMEFGLLLGADFDEQHRVYKILKVEPFNSVRKKMSVLVALPDGGVRAFCKGASEIILKMCNKIINSNGEVVDLPEDQANKVTAVINGFASEALRTLCLAVKDINQSEGDIDIDIPDSGYTLITIVGIKDPVRPGVREAVQTCLAAGVTVRMVTGDNIHTARAIAQECGILTEGGVAIEGPEFRDLSLEQMKDIIPRIQVMARSLPLDKHKLVTNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAVYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNEGLMKNPPVARGASFITKTMWRNIIGQSIYQLIVLGLLTFDGLNLLNITGSDATKVLNTLIFNSFVFCQVFNEINSRDIERINVFRGMFGSWIFLGIIFATAAFQVIIVEFLGTFASTVPLNWQMWLLSIAIGAVSMPLAAIVKCIPIERVTAIKHNHDGYEALPSGPELA 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272636g00003 1001 FunFam Calcium-transporting ATPase 613 762 - -
Stsc272636g00003 1001 PANTHER CATION TRANSPORTING ATPASE 89 977 - -
Stsc272636g00003 1001 Gene3D - 619 734 IPR023214 -
Stsc272636g00003 1001 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Stsc272636g00003 1001 FunFam Calcium-transporting ATPase 17 77 - -
Stsc272636g00003 1001 FunFam Calcium-transporting ATPase 213 334 - -
Stsc272636g00003 1001 SFLD C1.7: P-type atpase like 433 769 - -
Stsc272636g00003 1001 FunFam Calcium-transporting ATPase 734 980 - -
Stsc272636g00003 1001 NCBIfam HAD-IC family P-type ATPase 203 558 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272636g00003 1001 NCBIfam HAD-IC family P-type ATPase 682 805 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272636g00003 1001 PRINTS H+-transporting ATPase (proton pump) signature 749 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272636g00003 1001 PRINTS H+-transporting ATPase (proton pump) signature 572 590 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272636g00003 1001 PRINTS H+-transporting ATPase (proton pump) signature 717 733 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272636g00003 1001 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Stsc272636g00003 1001 SMART Cation_ATPase_N_a_2 113 188 IPR004014 -
Stsc272636g00003 1001 NCBIfam calcium-translocating P-type ATPase, PMCA-type 112 979 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc272636g00003 1001 SFLD p-type atpase 433 769 IPR044492 -
Stsc272636g00003 1001 SUPERFAMILY HAD-like 450 822 IPR036412 -
Stsc272636g00003 1001 PRINTS P-type cation-transporting ATPase superfamily signature 717 736 - -
Stsc272636g00003 1001 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Stsc272636g00003 1001 PRINTS P-type cation-transporting ATPase superfamily signature 741 753 - -
Stsc272636g00003 1001 PRINTS P-type cation-transporting ATPase superfamily signature 636 646 - -
Stsc272636g00003 1001 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Stsc272636g00003 1001 PRINTS P-type cation-transporting ATPase superfamily signature 614 625 - -
Stsc272636g00003 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 978 IPR023298 -
Stsc272636g00003 1001 Gene3D - 316 463 - -
Stsc272636g00003 1001 Pfam Cation transporting ATPase, C-terminus 802 975 IPR006068 -
Stsc272636g00003 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Stsc272636g00003 1001 Gene3D - 17 78 - -
Stsc272636g00003 1001 Pfam Cation transporter/ATPase, N-terminus 118 183 IPR004014 -
Stsc272636g00003 1001 Pfam E1-E2 ATPase 236 429 - -
Stsc272636g00003 1001 Gene3D - 464 618 IPR023299 GO:0000166
Stsc272636g00003 1001 Gene3D - 735 983 - -
Stsc272636g00003 1001 Pfam Cation transport ATPase (P-type) 468 554 - -
Stsc272636g00003 1001 CDD P-type_ATPase_Ca_PMCA-like 140 850 - -
Stsc272636g00003 1001 Gene3D - 236 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272636g00003 Stsc-Chr272636 4593 13066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272636g00003 58 998 Primary Pumps ATPases AT3G57330 71.766 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272636g00003 K01537 - qsa:O6P43_006482 1570.44