Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272635g00004 ATGGACAACAACGCGCCGCAAGTGGTGAAGAGGGAGGCCATGCCGGATGATGAAGATAATAATAATAAGAATAAGAAGAAGAAAGAAGTGGTGGTGGTGACATGTGTTGGCGGGAATAATAAGAAAGGTTCCGGTGGTGGCATGCGGTGTTGTCAGGCTGAGAATTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAAGGTCTGTGAGTATCATGCCAAGGCTCAGGTCGTTCTTGTTTCCGGCATTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGTTAGGTGAATTTGATGAGACAAAAAGAAGTTGCCGGAGGCGTTTGGCCGGACACAACGAACGGCGACGAAAGAACTCTGAATCTCAGGCAGAAGGCTCAAGCCGCAAAGGGATAAGTCCTCATCAGTTGAAGAAGGACACTGGCTTTGGGGATGATAGGAGCAGCAGAATTCAGATTCCTATCCAAGAGAATAATAATGGAGCTTACAAACATTTCCAGATACGATGA 528 0.4773 MDNNAPQVVKREAMPDDEDNNNKNKKKKEVVVVTCVGGNNKKGSGGGMRCCQAENCKADLEEARQYHRRHKVCEYHAKAQVVLVSGIRQRFCQQCSRFHELGEFDETKRSCRRRLAGHNERRRKNSESQAEGSSRKGISPHQLKKDTGFGDDRSSRIQIPIQENNNGAYKHFQIR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272635g00004 175 Gene3D - 42 112 IPR036893 GO:0003677|GO:0005634
Stsc272635g00004 175 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 134 IPR044817 GO:0003677
Stsc272635g00004 175 MobiDBLite consensus disorder prediction 138 152 - -
Stsc272635g00004 175 MobiDBLite consensus disorder prediction 11 25 - -
Stsc272635g00004 175 Pfam SBP domain 51 124 IPR004333 GO:0003677
Stsc272635g00004 175 MobiDBLite consensus disorder prediction 115 175 - -
Stsc272635g00004 175 ProSiteProfiles Zinc finger SBP-type profile. 48 125 IPR004333 GO:0003677
Stsc272635g00004 175 MobiDBLite consensus disorder prediction 157 175 - -
Stsc272635g00004 175 SUPERFAMILY SBT domain 49 128 IPR036893 GO:0003677|GO:0005634
Stsc272635g00004 175 MobiDBLite consensus disorder prediction 1 25 - -
Stsc272635g00004 175 FunFam Squamosa promoter-binding-like protein 14 42 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272635g00004 Stsc-Chr272635 14316 15545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272635g00004 45 138 SBP-box Gene Family AT1G53160 68.750 8.05e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc272635g00004 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272635g00004 - - csav:115700826 203.756