Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272635g00002 ATGAGATTTGACATGGTTCCCAGTGAAAGATTCCAGCTTTGTCTAAGGATTGCATTTGGGTGGTGGGTTTTTCTACTGTTTCTTCCCTCTGTGGCTGCTCTCAGACCCTTGAGGGAGAGAGCTCGCTCTTGGGGTGATGAGTGGCTTACAAGAAAAGATGAGAGTGATAGTGGTCCATTTTCACAATGGAACATAACTGGAACTTATAGAGGGAGTTGGAAGTTTTCAGATGCCGCAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAACTGGTAATTCTGTAATTGAATTATTTAGTACACCCACGAAGATAACTGGAGTACATTACATTCAGGGAGTTATTATATTCCATGATGTGTTTGACAATGAATATAATGTTGGTGGTGCCCAGATCAGAGTGGAAGAGTTTCTTTCCTACTATTGCAGTGGAAAAGAGAAAGTATTGAATCAGGATGGAGACCATATTTTATCCAATCCATACCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCCCGAGATAAGATGTGGAGAAAGAAACATTCACCAATGCATGACATGGAGAAACATTGTAATATTGAAATTGCCGCACAGATTTCACGGTTACCATCAACCAAAAATGAAGGAGAACATGATCGTTTTCACCTCGAAGGTTTGATGGAGAGTCCCTCCACGGACGATGATGGAGACTGTTTCTCACCATTACTGTTAAATGCAACATCGGTCAACATCGAGGTGTACTATAACAAGGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACGCAATCTGGGGCTGCTAAGGTTTCAATATTGATGATTGGCCAACAAGCGATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAATTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTCGTCTTTTCAATATTTGAGATGAGATATCTCCTCACCATCTGGAAGGCAAATAGGCCTTTGAGTAGCGGAGAAGGTTGGGAGGCAATGAGGCGCGAACTTTCAGTCTTATACAGCCGTTTCTATGGAATACTATTGGGAGGCATTCTCCTCATGTACGAGTTCCATCACTATTTAAGACCCATTCTTCTTCTTATGTACTCCTTCTGGATACCTCAGATAATCACCAATGTTATTCGTGACTCACGCAAGCCATTGCATCCTCATTATATCCTTGGGATATCTATTACTCGCTTAGCAGTCCCGCTATATGTTTTTGGTTGCCCAAACAACTTCATGCGCATACAGCCAGACAAGAGCTGGTGTGTTTCGTTGACTGTGTTTATTGGGCTTCAAGCTTCAGTTCTTCTCCTTCAGCATTATCTCGGGTCACGCTGGTTCATCCCTCGACAGATACTACCTGAGAAGTACAGCTATTATAGAAGGTTTAGTCAAGATCCAAGACATGCTACAGATTGTGTTATTTGTATGACATCCATTGATCTTAATCAGCGGTCCAATGACTGCATGGTGACACCTTGTGATCATTTCTTTCACTCTGGCTGTCTGCAAAGATGGATGGATGTAAAGATGGAGTGCCCAACTTGCCGGCGCTCTCTACCGCCAGCATAG 1665 0.4216 MRFDMVPSERFQLCLRIAFGWWVFLLFLPSVAALRPLRERARSWGDEWLTRKDESDSGPFSQWNITGTYRGSWKFSDAANGSSRFPDIRKTTGNSVIELFSTPTKITGVHYIQGVIIFHDVFDNEYNVGGAQIRVEEFLSYYCSGKEKVLNQDGDHILSNPYHLLGVFSSQVLQDSSRDKMWRKKHSPMHDMEKHCNIEIAAQISRLPSTKNEGEHDRFHLEGLMESPSTDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILIESLFNAFATAAFFKFVVFSIFEMRYLLTIWKANRPLSSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHHYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGISITRLAVPLYVFGCPNNFMRIQPDKSWCVSLTVFIGLQASVLLLQHYLGSRWFIPRQILPEKYSYYRRFSQDPRHATDCVICMTSIDLNQRSNDCMVTPCDHFFHSGCLQRWMDVKMECPTCRRSLPPA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272635g00002 554 SUPERFAMILY RING/U-box 491 552 - -
Stsc272635g00002 554 SMART ring_2 504 547 IPR001841 -
Stsc272635g00002 554 Pfam Ring finger domain 503 548 IPR001841 -
Stsc272635g00002 554 ProSiteProfiles Zinc finger RING-type profile. 504 548 IPR001841 -
Stsc272635g00002 554 PANTHER RING ZINC FINGER PROTEIN 98 553 - -
Stsc272635g00002 554 CDD RING-H2_TUL1-like 499 553 - -
Stsc272635g00002 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 554 IPR013083 -
Stsc272635g00002 554 FunFam E3 ubiquitin-protein ligase, putative 490 554 - -
Stsc272635g00002 554 SMART ringv_2 503 548 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272635g00002 Stsc-Chr272635 3723 9281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272635g00002 504 551 C3H Transcription Factor Family AT4G12190 39.583 5.17e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272635g00002 K23788 - gmx:100785460 947.577