Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272635g00001 ATGGCGGAACAACCGCATAAGCAGCTGCAGCATCCATCAGTAGTTCAGAAGTTAGCTGGACAATCTTATCTTGTGTCCAGGCTTTCACCCAGAAAATATTCCAACACTGGGAGTCACATCAATGGCGGCATGCAGGCTCCAGGCTTGGCTGCTCTTGCACCTGTATATCCGATCACCGCACATGCCCCAGCTGAAAAGGGAGTATCTGGTTTCTTGGTGGATTTTCTCATGGGAGGAGTATCTGCTGCTGTATCTAAGACAGCTGCTGCTCCAATTGAACGAGTTAAATTGCTCATTCAAAATCAGGATGAAATGCTCAAGACGGGTCGGTTGTCTGAACCGTACAAGGGAATTGGGGATTGTTTCGCTAGAACTATGAAGGATGAAGGAGTTATTTCCCTTTGGAGAGGAAATACTGCTAATGTTATTAGATACTTCCCTACACAGGCATTGAACTTTGCTTTCAAAGATTACTTCAAGAGGCTCTTCAACTTTAAGAAAGACAGAGACGGTTATTGGAAGTGGTTTGCTGGGAATTTGGCATCTGGTGGAGCTGCTGGGGCTTCCTCCCTCTTGTTTGTCTATTCTTTGGACTATGCTCGAACACGTTTAGCAAATGATGCTAAGGCTGCTAAAAAGGGTGGTGAGAGGCAGTTCAATGGATTGGTTGATGTTTACAGGAAGACCATTAAGTCTGATGGTATTGCTGGTCTCTATCGTGGATTCAACATCTCATGTGTTGGAATTATAGTGTACCGGGGTCTTTACTTCGGAATGTATGATTCTCTGAAACCAGTGGTTTTGGTTGGTTCAATGCAGGATAGTTTCCTCGCTAGTTTCCTCTTGGGTTGGGGAATCACAATAGGTGCTGGGTTGGCCTCTTACCCCATTGATACT 897 0.4515 MAEQPHKQLQHPSVVQKLAGQSYLVSRLSPRKYSNTGSHINGGMQAPGLAALAPVYPITAHAPAEKGVSGFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSEPYKGIGDCFARTMKDEGVISLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGSMQDSFLASFLLGWGITIGAGLASYPIDT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272635g00001 299 PRINTS Mitochondrial carrier protein signature 74 87 IPR002067 GO:0055085
Stsc272635g00001 299 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Stsc272635g00001 299 PRINTS Mitochondrial carrier protein signature 239 257 IPR002067 GO:0055085
Stsc272635g00001 299 PRINTS Mitochondrial carrier protein signature 283 299 IPR002067 GO:0055085
Stsc272635g00001 299 PRINTS Mitochondrial carrier protein signature 137 157 IPR002067 GO:0055085
Stsc272635g00001 299 PRINTS Mitochondrial carrier protein signature 87 101 IPR002067 GO:0055085
Stsc272635g00001 299 PRINTS Adenine nucleotide translocator signature 174 187 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Stsc272635g00001 299 PRINTS Adenine nucleotide translocator signature 115 136 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Stsc272635g00001 299 PRINTS Adenine nucleotide translocator signature 148 160 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Stsc272635g00001 299 PRINTS Adenine nucleotide translocator signature 71 83 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Stsc272635g00001 299 PRINTS Adenine nucleotide translocator signature 279 295 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Stsc272635g00001 299 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 162 IPR018108 -
Stsc272635g00001 299 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 266 IPR018108 -
Stsc272635g00001 299 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 70 299 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Stsc272635g00001 299 SUPERFAMILY Mitochondrial carrier 69 299 IPR023395 -
Stsc272635g00001 299 Gene3D Mitochondrial carrier domain 72 299 IPR023395 -
Stsc272635g00001 299 Pfam Mitochondrial carrier protein 70 166 IPR018108 -
Stsc272635g00001 299 Pfam Mitochondrial carrier protein 173 266 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272635g00001 Stsc-Chr272635 1 2071 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272635g00001 10 299 Antiporters AT4G28390 80.198 9.06e-169 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272635g00001 K05863 - gmx:100818408 533.872