Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272631g00004 ATGCAATATAATAATAGTAGATGGAAGAGGGGATCGAAAAAAGATGAATCCACTGCGCTTCCTCGCTTGCCGCGCTGTGGGCTCCACCGACACCGACACCGATTCGATTTCGCCGGAGCTGGATCTCCTTACTGCTATCTTCAACCGGAAATAGGTATGGCTATGGGGTCTCCAGATTTCGACGAAGAAGAGGAGATTCCGTTTCGGGAGGAAACTTCGTTTATCTCTTCGTCTTCTCCAAGGAAAGGACTGCCGCATCACGGTAGTCAAAATCAAGTTCACCATAATCACAATCACAGCCACAACAGTCATGCTTACAGTTTCGAGACGACCGCCGCGGCCGTCCTCTCTCCGGATTTGCCCAAATCTTCTGTATTCAGGCTTTTGCGGATCACGCGAATCAGGAGCCTTTATGTAGTCTTAATCAAAGCCAAGATCAACCTACTCCTCCCCTTTGGTCCACTCGCCATTGCCCTCCATTATCTCACCGGAAAACATGGATGGGTGTTCTTCTTCAGCTTGTTGGGTATTACTCCATTGGCAGAGCGTTTGGGTTATGTTACTGAGCAACTTGCATTCTACACAGGACCAACAGTTGGGGGTCTGCTGAATGCCACATTTGGCAACGCAACTGAAATGATTATATCGATCTTTGCATTGAAGAATGATATGATTAGGGTCGTTCAGCAATCGTTACTCGGCTCAATCCTGTCGAATATGCTCTTAGTTCTTGGGTGTGCATTCTTTACCGGTGGGATTGTCCACTACAAAAAGGTGCAAGTTTTCAATAAGGCGGCTGCTGTTGTCAATTCCGGGTTGCTTTTGATGGCTGTGATGGGCATACTGTTCCCCGCAGTGCTTCACTTTACTCATTCGGAGGTTCACCTTGGGAAGTCGGTGTTATCTCTATCAAGATTTAGCAGCTGTGTGATGCTAATCGCGTATGCAAGCTACCTTTTTTTTCAACTTAAGAGCCAGCCCAATCTTTATAGTTCTGTGGATGAGGAAGGAGTTAGTGGTGAAAATTCAGATGAGGAGGAAGAACTTGAATTAACTCAAACGGAAGCAATAGTCTGGCTTGCTATCTTAACGGCATGGGTGTCATTATTGTCGGGGTACCTTGTAGACGCCATCGAGGGAGCATCTGAGTCATTAAATATGTCGATGGCTTTTATCAGTGTCATCTTGCTCCCAATCGTAGGCAATGCTGCAGAACATGCAAGTGCTATCATGTTTGCCATGAAGGACAAACTTGATATCACCATCGGAGTTGCTGTTGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGTATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACCGCCACACTTTTTATCACGGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTTATTGTAGCTGCCAGTTTCTTCGTACATGTAGATCCTAAAAGTGGCGATGACTAG 1530 0.4529 MQYNNSRWKRGSKKDESTALPRLPRCGLHRHRHRFDFAGAGSPYCYLQPEIGMAMGSPDFDEEEEIPFREETSFISSSSPRKGLPHHGSQNQVHHNHNHSHNSHAYSFETTAAAVLSPDLPKSSVFRLLRITRIRSLYVVLIKAKINLLLPFGPLAIALHYLTGKHGWVFFFSLLGITPLAERLGYVTEQLAFYTGPTVGGLLNATFGNATEMIISIFALKNDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCVMLIAYASYLFFQLKSQPNLYSSVDEEGVSGENSDEEEELELTQTEAIVWLAILTAWVSLLSGYLVDAIEGASESLNMSMAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272631g00004 509 MobiDBLite consensus disorder prediction 1 21 - -
Stsc272631g00004 509 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 91 504 IPR004713 GO:0006812|GO:0008324|GO:0016020
Stsc272631g00004 509 MobiDBLite consensus disorder prediction 71 102 - -
Stsc272631g00004 509 FunFam Vacuolar cation/proton exchanger 197 336 - -
Stsc272631g00004 509 FunFam Vacuolar cation/proton exchanger 344 500 - -
Stsc272631g00004 509 MobiDBLite consensus disorder prediction 71 91 - -
Stsc272631g00004 509 Pfam Sodium/calcium exchanger protein 357 496 IPR004837 GO:0016020|GO:0055085
Stsc272631g00004 509 Pfam Sodium/calcium exchanger protein 168 323 IPR004837 GO:0016020|GO:0055085
Stsc272631g00004 509 NCBIfam calcium/proton exchanger 139 499 - -
Stsc272631g00004 509 Gene3D - 197 500 IPR044880 -
Stsc272631g00004 509 NCBIfam calcium/proton exchanger 149 499 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272631g00004 Stsc-Chr272631 11724 18919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272631g00004 60 504 Antiporters AT3G13320 66.592 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272631g00004 K07300 - gmx:100806000 670.618