Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272627g00001 ATGGAAACTGAGAAAACTGATGTTTCAAAGGCTGAAGAATTCAAACAGCTTGCCAATGAAGCATTCAATGCACGGAAATATGCCCAAGCCATTGATTTATATACACAAGCAATTGAGCTAAACAGTCGCAATGCCGTTTACTGGGCTAATCGTGCCTTCGCTCATCTTCGGCTTGAAGAATATGGTAGTGCAATACAGGATGCTACAACGGCTATTGAAGTTGATCCCAAATATTCAAAGGGTTATTACAGAAGAGGTGCTGCTCATCTTGGGTTGGGCAAATTCAAGGATGCACTTAAGGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAGGCTGTTATGAAACTTAAATTTGAAGAAGCCATTTCTGCACCAGTGTCTGAAAGGCGCTCAGTAGCTGAATCTATAGATTACCATTCAATAGGAAAGGGCCACAATACTTCGGTGTCTACCGAAATGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGCGTTGGTGATGTTCAAGACATCAAAGGCCACAATAATAAGTGCAATTGTGATTGGTTTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTGGCCGCAATACTGGTATATTTAGGAGTCATTTAATAGCCCAGGTCTTAGCTTAA 675 0.4178 METEKTDVSKAEEFKQLANEAFNARKYAQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDATTAIEVDPKYSKGYYRRGAAHLGLGKFKDALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAISAPVSERRSVAESIDYHSIGKGHNTSVSTEMAIAAVTVAVMAALVMFKTSKATIISAIVIGLLLLLGAYWWSGRNTGIFRSHLIAQVLA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272627g00001 224 Gene3D Tetratricopeptide repeat domain 2 160 IPR011990 GO:0005515
Stsc272627g00001 224 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Stsc272627g00001 224 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Stsc272627g00001 224 PANTHER RNA POLYMERASE II-ASSOCIATED PROTEIN 3 6 138 - -
Stsc272627g00001 224 Pfam Tetratricopeptide repeat 16 78 - -
Stsc272627g00001 224 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Stsc272627g00001 224 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Stsc272627g00001 224 SMART tpr_5 11 44 IPR019734 GO:0005515
Stsc272627g00001 224 SMART tpr_5 45 78 IPR019734 GO:0005515
Stsc272627g00001 224 SMART tpr_5 79 112 IPR019734 GO:0005515
Stsc272627g00001 224 SUPERFAMILY TPR-like 6 136 IPR011990 GO:0005515
Stsc272627g00001 224 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272627g00001 Stsc-Chr272627 686 4933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272627g00001 11 104 U-box Gene Family AT3G07370 31.915 4.85e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272627g00001 K04460 - gmx:100820099 350.132