Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272618g00001 ATGGGGGATCACTTTGTGTTGCTGGTTGATCGGTTGCTTACTGAATCAACATTGGAAGCTGCACTTGAAAGCAGAAATCGTTGGATGCAGGCTGCATCCTCAGCAGTGAATGATGCACATGTTGATCTCTCTTTGATGAAACCGGGTCTTGATGATATAAAGTCTCCAAGGAAACTTGTAGAATGCAGGATATGTCATGATGAAGATGAAGATTCAAATATGGAGTCACCCTGCTTCTGTTGTGGTAGTTTGAAGTACGCTCACCGGAGATGCATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGTCATCAGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCGCTGTTTCAATTTGGACGCATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGACTTAAATAGTACTCACTTGGTCAGCATGGTTTCTACCGATCAGAACCTTACCAATTCTAACTATGACCAGTTTTCAGCATCCACTACTGGAAGTTTGATATGCTGCCGTTCCGTTGCCGTCATTTTCATGGTTCTACTAATTTTAAGACACACTCTTCCCCTGCTAATCAGTGAGAATAAGGATTATTCTTTCCCCCTCTTTATGCTGCTATTGTTTCGGATTGCTGGTATCGTCCTCCCCATATACTTTATGGTCAGAGCAGTGACATTGATCCAGCGACATCGGCGACAACATCGAGATCATCCTAATGGCTTGGTCACACTTTCTGATGATGAAAATGAGCACACGGTTTCGCAGCCTCAGCCTCATGTAATACGTGTACTGTAA 810 0.437 MGDHFVLLVDRLLTESTLEAALESRNRWMQAASSAVNDAHVDLSLMKPGLDDIKSPRKLVECRICHDEDEDSNMESPCFCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVSTDQNLTNSNYDQFSASTTGSLICCRSVAVIFMVLLILRHTLPLLISENKDYSFPLFMLLLFRIAGIVLPIYFMVRAVTLIQRHRRQHRDHPNGLVTLSDDENEHTVSQPQPHVIRVL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272618g00001 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Stsc272618g00001 269 SUPERFAMILY RING/U-box 60 112 - -
Stsc272618g00001 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 117 IPR013083 -
Stsc272618g00001 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Stsc272618g00001 269 Coils Coil 266 269 - -
Stsc272618g00001 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Stsc272618g00001 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Stsc272618g00001 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Stsc272618g00001 269 MobiDBLite consensus disorder prediction 242 269 - -
Stsc272618g00001 269 FunFam Zinc finger family protein 51 117 - -
Stsc272618g00001 269 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272618g00001 Stsc-Chr272618 448 4095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272618g00001 51 108 C3H Transcription Factor Family AT2G37950 44.262 4.10e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272618g00001 - - vun:114190540 456.832