Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272615g00004 ATGGAAAACCCGACCTTACCGGAAAATACCCCGGAGAACAACAGGCAGGCGACGGCGGCAGTAGCGGCGGAAGGCGACAGCGTCTCCTCCGATGGTTTGAGAGGCGAAGATGGTGAGCGGAACTCAGGCGGCGCAAACCGGTGGCCGCGAGAAGAGACAATGGCGTTGATCAAAATTAGGTCTGAAATGGACGGCGCTTTCAGAGACATCAGCCCCAAAGCCCCTCTGTGGGAACAAGTCTCAAGGAAATTAGGTGAGCTGGGTTATGAAAGGAGTGCGAAGAAGTGTAAAGAGAAGTTCGAGAATATTTACAAGTACCATAGGAGGACCAAGGAAGGCCGTTCCGGAAAACGTAACGGGAAAACTTACCGTTTCTTTGATCAACTCGAGGCATTAGACCCGCACCCTAACCCCGCTACTCCCAACAATAACGCCGTTATTCAAGATGCGGTTCCGTTTTCTGTTAGGTTTCCAGTTACTACAATGGAGCATTCCAGCTCCGCCACTTCGTCTTACTCGAGCGGCAGGGGTGAAGGTGAAGGTGAAGGTGAAGAGAGGAGGAGGAAGAAGAGGAGGAGGCTGAGGATGTTCTTTGAGGGGCTTATGAGGGAGGTTTTGGAGAAGCAAGAGAGCCTGCAGAGGAAGTTCATGGAAGTGCTTGATAAGTGTGACCAAGATCGAATGGCGAGGGAGCAAGCATGGAAGACGGAGGAGCTTGCAAGGATCAAGAAGGAGCGCGAGCTTCTCGCTCAGGAACGCTCAATTGCCGCCGCCAAGGACGAAGCTGTTATGTCCTTCATAAGAAAGTTTGCAGAGAAGGACAACAATGGCCCGCTACAATTTCCAGCTGAAAATAACAACCTGAAGGAGAAGGAGGAGGAGAAGGATAAAGAAAAAGAGAAAGAGAAAGAGGAAGTTGGGAATGGCATTAATGTTGGGAATTTCGTGCACATGAGTTCTTCGCGGTGGCCGAAGGATGAAGTAGAGGCATTGATAAGGCTGAGGACACAGCTAGATGAACAATTGCAGCAACAAGGGAATAATAATGGTGGGTCATCAAAGGGTCCGCTTTGGGAGGAGGTGTCTACGGCGATGAAGGGACTCGGATATAATCGGAGCGCCAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAATATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCAGAAGACTCTAAAACATGCCCCTATTATCACCATCTTGAGGCCATATATAGCAAGAAGCCCAGGAACAATAACAAGATTCTTGATGATGATGAAGATGATATGCATAATGGTAGTAATGGTAATGATAATAACAAGAAGAACGAGTTGAAGCCTGAAGAGCTTTTGATGCATATCATGAATGGTCAAGAAGAGAGGCAACAGGATCGAGATCAAGATCAAGACCACTCTTCATCTGAAGATGCAGAGAGAGAAAACACGGATCAGAACCATAATGGATATCAGATGGTTAATAATAGTCCTTCTTCCGTAGCAATCATGAGTTAA 1521 0.478 MENPTLPENTPENNRQATAAVAAEGDSVSSDGLRGEDGERNSGGANRWPREETMALIKIRSEMDGAFRDISPKAPLWEQVSRKLGELGYERSAKKCKEKFENIYKYHRRTKEGRSGKRNGKTYRFFDQLEALDPHPNPATPNNNAVIQDAVPFSVRFPVTTMEHSSSATSSYSSGRGEGEGEGEERRRKKRRRLRMFFEGLMREVLEKQESLQRKFMEVLDKCDQDRMAREQAWKTEELARIKKERELLAQERSIAAAKDEAVMSFIRKFAEKDNNGPLQFPAENNNLKEKEEEKDKEKEKEKEEVGNGINVGNFVHMSSSRWPKDEVEALIRLRTQLDEQLQQQGNNNGGSSKGPLWEEVSTAMKGLGYNRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEAIYSKKPRNNNKILDDDEDDMHNGSNGNDNNKKNELKPEELLMHIMNGQEERQQDRDQDQDHSSSEDAERENTDQNHNGYQMVNNSPSSVAIMS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272615g00004 506 SMART sant 319 387 IPR001005 -
Stsc272615g00004 506 SMART sant 44 106 IPR001005 -
Stsc272615g00004 506 FunFam Trihelix transcription factor GT-2 48 109 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 274 305 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 162 176 - -
Stsc272615g00004 506 Coils Coil 281 308 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 1 17 - -
Stsc272615g00004 506 Gene3D - 48 109 - -
Stsc272615g00004 506 Gene3D - 323 390 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 286 305 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 487 506 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 419 506 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 162 189 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 30 46 - -
Stsc272615g00004 506 ProSiteProfiles Myb-like domain profile. 40 104 IPR001005 -
Stsc272615g00004 506 CDD GT1 46 111 - -
Stsc272615g00004 506 CDD GT1 321 392 - -
Stsc272615g00004 506 Pfam Myb/SANT-like DNA-binding domain 321 414 IPR044822 -
Stsc272615g00004 506 Pfam Myb/SANT-like DNA-binding domain 46 132 IPR044822 -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 419 486 - -
Stsc272615g00004 506 PANTHER FI21293P1 16 478 - -
Stsc272615g00004 506 MobiDBLite consensus disorder prediction 1 50 - -
Stsc272615g00004 506 FunFam Trihelix transcription factor GT-2 323 390 - -
Stsc272615g00004 506 ProSiteProfiles Myb-like domain profile. 321 385 IPR001005 -
Stsc272615g00004 506 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272615g00004 Stsc-Chr272615 25923 28339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272615g00004 44 415 Trihelix Transcription Factor Family AT1G76880 45.721 2.22e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc272615g00004 Myb_DNA-bind_4 1.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272615g00004 - - aip:107623117 721.465