Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272615g00001 ATGGCAGATGGTGAGGATATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTGAAGGCAGGATTTGCCGGTGATGATGCACCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGCCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTAGGTGATGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATCTGGCATCATACATTTTACAATGAATTGCGTGTTGCCCCCGAGGAGCACCCTGTGCTTCTAACGGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTCTATGCAAGTGGTCGCACAACTGGTATTGTTCTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCAGTTCTGCAATTGAGAAGAACTACGAGCTTCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGTCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGTATTCATGAAACCACCTACAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTGTACGGCAACATTGTCCTTAGTGGTGGGTCTACCATGTTTCCTGGTATTGCTGACCGTATGAGCAAGGAGATTACTGCGCTTGCTCCTAGCAGCATGAAGATCAAGGTTGTGGCTCCACCAGAGAGGAAGTATAGTGTCTGGATAGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCCAAGGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 942 0.4766 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGSSAIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272615g00001 313 FunFam Actin, alpha skeletal muscle 36 73 - -
Stsc272615g00001 313 Gene3D - 1 154 - -
Stsc272615g00001 313 FunFam Actin, alpha skeletal muscle 3 159 - -
Stsc272615g00001 313 Pfam Actin 172 313 IPR004000 -
Stsc272615g00001 313 Pfam Actin 5 171 IPR004000 -
Stsc272615g00001 313 CDD NBD_sugar-kinase_HSP70_actin 10 180 - -
Stsc272615g00001 313 Gene3D - 155 269 - -
Stsc272615g00001 313 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Stsc272615g00001 313 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Stsc272615g00001 313 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Stsc272615g00001 313 PRINTS Actin signature 28 37 IPR004000 -
Stsc272615g00001 313 PRINTS Actin signature 117 130 IPR004000 -
Stsc272615g00001 313 PRINTS Actin signature 142 161 IPR004000 -
Stsc272615g00001 313 PRINTS Actin signature 63 85 IPR004000 -
Stsc272615g00001 313 PRINTS Actin signature 51 62 IPR004000 -
Stsc272615g00001 313 ProSitePatterns Actins signature 2. 294 302 IPR004001 -
Stsc272615g00001 313 PANTHER ACTIN 9 171 IPR004000 -
Stsc272615g00001 313 SUPERFAMILY Actin-like ATPase domain 149 313 IPR043129 -
Stsc272615g00001 313 Gene3D Actin; Chain A, domain 2 34 74 - -
Stsc272615g00001 313 FunFam Putative actin-related protein 5 277 305 - -
Stsc272615g00001 313 FunFam Major actin 197 276 - -
Stsc272615g00001 313 SMART actin_3 7 313 IPR004000 -
Stsc272615g00001 313 Gene3D - 272 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272615g00001 Stsc-Chr272615 3728 5510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272615g00001 1 313 Cytoskeleton Gene Families AT3G12110 75.332 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272615g00001 K10355 - nnu:104598081 592.038