Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272607g00001 ATGGCTGTACATTCGAAATATCGGCTTATTGCTTACTCAGAAGAGATTATAGATGGGCAGCCTATTTTTGTTTCTTCAAACTGTCTTCCTATCAAGGCTATGAAATATGAACCAGCTGGCCATGCCTTCCATTCTGCTGCCCTCAAACTTCTTGGTGTTCGGGAGAATAATGAAGATCCTGATTCTAAAAAGGTGGTTGAAGATAAGGAGCAGACATATCTGCCGTCCGATTCCTATAGCAGCAAGAGCAAGAAGAAATCCGGTGATGGAGACAAGCAGCAAGATCACTATGCATTGTTGGGCCTGAGCCATCTAAGATATCTTGCCACGGAGGATCAAATTCGTAAGAGCTACCGTGAAACTGCCTTGAGATTTCATCCTGACAAACAGGCTGCTCTGCTTCTCGCCGAGGAAACTGAAGCTGCAAAGCAGGCAAAGAAAGATGAAATAGAAAGTCACTTTAAGGCCATACAGGAGGCGTATGAGGTCTTGATTGATCCTGTGAAAAGAAGAATTTATGATTCGACAGATGAGTTTGATGATGAGATTCCAACTGATTGTGCTCCACAGGACTTCTTCAAAGTGTTTGGCCCTGCTTTTATGAGGAATGGTCGGTGGTCAGTCACTCAACCGATTCCATCACTAGGTGATGATAATACTCCTGTAAAAGAGGTTGATGATTTCTACAATTTCTGGTACTCCTTTAAAAGTTGGAGGGAATTTCCTCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGTGACCATAAGAGGTGGATGGAAAGGCAGAATGCGAAACTTTCAGAGAAAGCTAGGAAGGAGGAGTATGCTCGGATACGGTCTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAGGAAGAGGAGAAAGCTGAGAAGCAACGGAAAAAAGAGGCTAAATTCATGGCTAAGAAGATGCAGGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAAGCGGCGAAAGGAGGAGGAAGAGAAACGTGCTGCGGAAGCTGCTTTACAGCAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTCTTGCGAAAGGAGAGAACACGGCTGCGGAATCTCTCTGCACCTATATTGTCACAACAGTTACTTGGTATTTCTGATGATGATGTAGAGAAGCTTTGCATGTCATTTGATATGGAGAAGCTAAGGGGTTTGTGTGAGAAAATGGAGGGAAAACAGGTAGAGGACCAGGCAGAAGTTCTAAGAGATGCACTGAGTTGCAAGAAAGATGAGACTGATAAGAAAGAAGAGAGGAGCAACCAACAAAATGGTTCTGTCAAGGTTAATGGCAGTGTTTCTTTAAGCAGCATTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGATTGATCTATTGAAGAAAGGAATGCAGAAATATCCTAAAGGAACTTCAAGGAGATGGGAGGTTATTTCCGAATACATTGGTACTGGAAGATCAGTGGACGAAATTATGAAGGCAACAAAAACAGTTCTCCTCCAGAAGCCAGNNNNNNNNNNAGAGAAAAGGAAACCTGCAGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAATTAGAAGGGGTATCAAATCCTGCAAAGCCTGAAAATAGTTCCGCTGCAACAACAAATAACTCAGAAGACTCTAATAGCAACCAGGCATCTGGTTCTGCTCCTGCCTCTGCTGCTGCAAACGGAGTTTCGTCTAGTTCAGAACAAGACGTGTGGTCTGCAGTACAGGAAAGAGCATTGGTTCAAGCTTTAAAAGCCTTCCCAAAGGAAACCAACCAGCGATGGGAACGAGTTGCAACAGCTGTTCCTGGAAAGACTGTGAATCAGTGCAAGAAAAAGTTCGCACTGATGAAGGAGAGTTTCAGGAGCAAGAAAACTGCTGTTTAA 1926 0.4315 MAVHSKYRLIAYSEEIIDGQPIFVSSNCLPIKAMKYEPAGHAFHSAALKLLGVRENNEDPDSKKVVEDKEQTYLPSDSYSSKSKKKSGDGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVTQPIPSLGDDNTPVKEVDDFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRSLVDNAYKRDPRILRRKEEEKAEKQRKKEAKFMAKKMQEEEAARIAEEEKRRKEEEEKRAAEAALQQKKVKEKEKKLLRKERTRLRNLSAPILSQQLLGISDDDVEKLCMSFDMEKLRGLCEKMEGKQVEDQAEVLRDALSCKKDETDKKEERSNQQNGSVKVNGSVSLSSIEKKEKPWSKEEIDLLKKGMQKYPKGTSRRWEVISEYIGTGRSVDEIMKATKTVLLQKPXXXXEKRKPAAQSIASPLSTREELEGVSNPAKPENSSAATTNNSEDSNSNQASGSAPASAAANGVSSSSEQDVWSAVQERALVQALKAFPKETNQRWERVATAVPGKTVNQCKKKFALMKESFRSKKTAV 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 541 585 - -
Stsc272607g00001 641 CDD SANT 585 631 IPR001005 -
Stsc272607g00001 641 Gene3D - 451 510 - -
Stsc272607g00001 641 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Stsc272607g00001 641 ProSiteProfiles SANT domain profile. 580 635 IPR017884 -
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 507 585 - -
Stsc272607g00001 641 CDD SANT 459 501 IPR001005 -
Stsc272607g00001 641 SUPERFAMILY Homeodomain-like 458 502 IPR009057 -
Stsc272607g00001 641 SUPERFAMILY Homeodomain-like 583 635 IPR009057 -
Stsc272607g00001 641 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Stsc272607g00001 641 Gene3D DnaJ domain 78 187 IPR036869 -
Stsc272607g00001 641 Pfam Myb-like DNA-binding domain 458 499 IPR001005 -
Stsc272607g00001 641 Pfam Myb-like DNA-binding domain 584 627 IPR001005 -
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 327 349 - -
Stsc272607g00001 641 CDD DnaJ 95 166 IPR001623 -
Stsc272607g00001 641 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 2 640 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 417 455 - -
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 58 93 - -
Stsc272607g00001 641 Gene3D - 575 641 - -
Stsc272607g00001 641 SMART sant 581 633 IPR001005 -
Stsc272607g00001 641 SMART sant 456 509 IPR001005 -
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 417 437 - -
Stsc272607g00001 641 PRINTS DnaJ domain signature 118 133 IPR001623 -
Stsc272607g00001 641 PRINTS DnaJ domain signature 48 66 IPR001623 -
Stsc272607g00001 641 PRINTS DnaJ domain signature 149 169 IPR001623 -
Stsc272607g00001 641 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Stsc272607g00001 641 SMART dnaj_3 94 169 IPR001623 -
Stsc272607g00001 641 ProSiteProfiles Myb-like domain profile. 577 627 IPR001005 -
Stsc272607g00001 641 MobiDBLite consensus disorder prediction 438 454 - -
Stsc272607g00001 641 FunFam Myb family transcription factor 579 639 - -
Stsc272607g00001 641 Pfam DnaJ domain 95 174 IPR001623 -
Stsc272607g00001 641 Coils Coil 317 369 - -
Stsc272607g00001 641 SUPERFAMILY Chaperone J-domain 66 173 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272607g00001 Stsc-Chr272607 2924 5408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272607g00001 96 295 C2H2 Transcription Factor Family AT1G74250 28.452 2.54e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272607g00001 DnaJ 1.6e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272607g00001 K09522 - gmx:100814414 916.761