Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272605g00003 ATGGCTAGATCCAAGGTGAAGCTTGCATACATAACCAATGATTCTTCAAGAAGGGTTACATATAAGAAGAGGAAGAGAGGATTGATGAAGAAAATCAATGAACTAAGCACCCTTTGTGGTGTTGATGCCTGTGCCATTGTGTACAATTCACGTGAAGATTCCCATCCTCTTGATGAGCCGGAGGTTTGGCCCTCCCGCGAGGGAGTTGAAAAGGTGGTGGAAAAATTCCGTAAAATGTCTACGGTGGATCAAAGCAAGAAGAGGATGGATCATGTGGACTACTTGAACCTAAGGATCTCAAAAGAGGAGGAGAGGCTCAAGAAGAAAAGGAATGAGAATTGCGAGAAGGAGTTCATCCTTCGCATGAATGATTACATGCAAACAAAACAGCTTCCGGAGAATTTGACCATGCTTGATCTGAACAACATGGCTTATTACACCGATATGAAGCTTAGGGAGGTCGAGTTGAGGATGCAGATTCTGCTGGACAAAGAGAACAAGGAGAAGGAGAGGGAGAAGGAGAAGATGAAGATGATGGATATCGCGTCGTCGTCGATGGGGCCCGCTCCTCCCCTTGAGAGTCCTGAAGAGGCTAGCAGGAGGATGATGATGAACCCTTTTTCATTTTTTGATGAAGGCAACTATAGTAGTGATGGCTTGGAGGTGATTATTGCAAATGCAATGAGGCTTAATACTAATAAGTAA 705 0.4426 MARSKVKLAYITNDSSRRVTYKKRKRGLMKKINELSTLCGVDACAIVYNSREDSHPLDEPEVWPSREGVEKVVEKFRKMSTVDQSKKRMDHVDYLNLRISKEEERLKKKRNENCEKEFILRMNDYMQTKQLPENLTMLDLNNMAYYTDMKLREVELRMQILLDKENKEKEREKEKMKMMDIASSSMGPAPPLESPEEASRRMMMNPFSFFDEGNYSSDGLEVIIANAMRLNTNK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272605g00003 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc272605g00003 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc272605g00003 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc272605g00003 234 FunFam Agamous-like MADS-box protein AGL80 13 103 - -
Stsc272605g00003 234 Coils Coil 151 182 - -
Stsc272605g00003 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc272605g00003 234 SUPERFAMILY SRF-like 3 99 IPR036879 GO:0003677|GO:0046983
Stsc272605g00003 234 Coils Coil 92 112 - -
Stsc272605g00003 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Stsc272605g00003 234 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Stsc272605g00003 234 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc272605g00003 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc272605g00003 234 PANTHER MADS BOX PROTEIN 3 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272605g00003 Stsc-Chr272605 23577 24555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272605g00003 3 168 Type I MADS-box Gene Family AT1G65300 41.916 5.86e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc272605g00003 SRF-TF 8.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272605g00003 - - aip:107606857 278.87