Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272605g00001 ATGCAAGATCCACCACCAACGCCTCCGCCACCACCACCTCCAAACTCCGCTTCCCACTTACCTCCTCCGGCTCCCTCCACCGCCGCAACATCCTCAGCCTCCTCACTCTTCATTCGCTCCGCCGCCAATGGCCACCGCCGAGCTCACTCCGAGGTCAGTTTCCGCTTACCTGACGACATGATGGACCTCTCGCCGTCGGATCCGTTCACCGGCGGCTCCTCCACCGCCAGCCTCGACGAGATCGGATCGGAGGACGACCTCTTCACGACGTACATTGACGTGGACAAGCTCGGGAATGGTTCGGGCGGATCCGGAAACGGATCGGATCCGATTGGAAACGGTACGGAATCGGAGAAGGGGGTTCCGAGGCCGAGGCACAGGCACAGTAACTCTGTGGATGGTTCTACGACGTCGTTCGGGGAGATCATGGATGCTAAGAAAGCTATGCCTCCTGATAAGCTCGCTGAGCTTTGGACCGTTGATCCCAAGCGTGCTAAGAGGATACTTGCGAATCGGCAATCTGCTGCTCGATCAAAAGAGAGAAAGGCTCGCTACATTCAAGAACTTGAGCGCAAAGTTCAGACTCTTCAAACTGAAGCCACAACCCTTTCTGCTCAGCTGACATTATACCAGAGGGACACAAATGGTCTGAGTACTGAAAACACAGAGCTTAAGCTCCGCCTGCAAGCCATGGAGCAACAAGCACAACTTCGTGACGCTCTTAATGAGGCACTGAAGAAGGAAGTCGAGAGGCTTAAGGTTGCCACGGGCGAAATGATGAGCCCCACTGAGTCCTTTAACCTTGGAATGCACCAGATGCCATTCACAGGAGCAAATTTCTTCCCAATTCCTCCCCAATCAGGTCCTTCTGATCACCAGAACATGCAGTTGCCACCATTTGCTCACGCCCCATCTAGCATGCCAACACATCAACTACAACAACCAAATCCTCATCCACTCTCGGAAATAATGCAAAATCATATGCAGGGACTCGACATTAACAGCAAAGGACCAACTACGGTGAAGTCCGAAGGTCCATCGATCTCTGCAAGTGAGAGTAGCACTACATTCTGA 1074 0.5335 MQDPPPTPPPPPPPNSASHLPPPAPSTAATSSASSLFIRSAANGHRRAHSEVSFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFTTYIDVDKLGNGSGGSGNGSDPIGNGTESEKGVPRPRHRHSNSVDGSTTSFGEIMDAKKAMPPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTNGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMSPTESFNLGMHQMPFTGANFFPIPPQSGPSDHQNMQLPPFAHAPSSMPTHQLQQPNPHPLSEIMQNHMQGLDINSKGPTTVKSEGPSISASESSTTF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272605g00001 357 FunFam probable transcription factor PosF21 162 215 - -
Stsc272605g00001 357 SMART brlzneu 159 223 IPR004827 GO:0003700|GO:0006355
Stsc272605g00001 357 MobiDBLite consensus disorder prediction 331 357 - -
Stsc272605g00001 357 MobiDBLite consensus disorder prediction 22 39 - -
Stsc272605g00001 357 Pfam bZIP transcription factor 163 220 IPR004827 GO:0003700|GO:0006355
Stsc272605g00001 357 Coils Coil 214 258 - -
Stsc272605g00001 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 224 IPR004827 GO:0003700|GO:0006355
Stsc272605g00001 357 MobiDBLite consensus disorder prediction 1 21 - -
Stsc272605g00001 357 MobiDBLite consensus disorder prediction 98 138 - -
Stsc272605g00001 357 Coils Coil 179 206 - -
Stsc272605g00001 357 CDD bZIP_plant_RF2 164 213 IPR044759 GO:0003700|GO:0006355
Stsc272605g00001 357 Gene3D - 162 215 - -
Stsc272605g00001 357 MobiDBLite consensus disorder prediction 1 82 - -
Stsc272605g00001 357 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 334 - -
Stsc272605g00001 357 SUPERFAMILY Leucine zipper domain 163 214 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272605g00001 Stsc-Chr272605 10414 13747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272605g00001 45 357 bZIP Transcription Factor Family AT2G40620 55.211 6.82e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc272605g00001 bZIP_1 6.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272605g00001 - - gmx:100815680 479.944