Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272600g00001 ATGGGGTGCTCATCAAGACTAGCAGAACCTCTTCTTATTCTTGTTGCATTCTTCTGTCTTTTGAGATCTGCACATGCTTTGCTTTCTCCCAAAGGAATCAACTTTGAAGTGCAAGCTTTAATGGCTATAAAAGCTTCTCTAGTGGACCCTCATGGCATTTTGGACAATTGGGATGGAGATGCAGTTGATCCATGTAGCTGGAACATGGTTACATGTTCTCCTCAAAGCTTTGTTATTAGCCTGGGAATTCCAAGTCAGAATTTATCTGGCACTCTATCAGCAACCATTGGAAACCTAACAAACCTTCAGAGTGTTGTGCTGCAAAATAATAATATAAGTGGACCAATCCCTTCAGAGCTAGGCAAACTTTCCATGCTTCAAACACTTGATCTCTCTAATAACTTCTTCAATGGGGAAATTCCTCAATCCCTTGGTCATCTCAGAACACTTCAGTACTTGAGGCTTAATAATAACAGTTTTTCTGGGGAATGTCCTGTGTCAGTGGCTAACATGGCTCAGCTTTCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGACCAGTACCAAGAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCCCTTGTATGTGCAACAGGAAAAGAAACAAACTGCCATGGAATGACACTGATGCCTATGTCAATGGACTTAAACACTACTCAGAGTGCTTCACTATCAAGCAGACATAAAACTCACAAATTCGCCGATGCGTTCGGTTTAAGTCTTGGATGCATCTCCTTCATAGTTCTTGTCTTTGTACTTTTTCTACGGTGGAGGCATAAGGCCAATAAGCAGACATTCTTTGATGTCAAAGACAGGCACCATGAAGAAGTGTACCTTGGAAACCTGAAGAGGTTCCAATTGAGAGAATTGCAGATTGCTACAAACAATTTCAGCAACAAGAACATACTTGGAAAGGGTGGTTTTGGGAATGTGTACAAAGGAACTCTCCAAGATGGCACGGTTGTAGCTGTGAAGAGGCTCAAAGATGGGAATGCCATTGGAGGGGAGATTCAGTTTCAAACAGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAACCTCCTTAAACTTTATGGATTTTGTGTTACACCAACAGAAAGGCTTTTGGTTTATCCCTACATGTGCAATGGCAGTGTTGCTTCACGTCTCAAAGGTAAGCCAGTCCTAGAGTGGGGCACAAGGAAGCAGATTGCATTAGGAGCAGGAAGAGGACTAGTATACCTCCATGAGCAGTGTGATCCAAAAATAATCCACAGGGATGTAAAAGCTGCAAACATATTACTTGATGAGTACTGTGAGGCCGTGGTTGGTGATTTTGGGTTGGCAAAGCTTTTGGATCATCAAGACACACATGTGACAACTGCGGTGAGAGGTACTGTGGGCCACATTGCACCAGAATATCTCTCCACAGGACAGTCCTCTGAGAAGACTGATGTCTTTGGATTTGGTATTCTCCTTCTTGAGTTGATAACGGGCCTGAGGGCTTTGGAGTTTGGTAAGGCTGCTAACCAGAAAGGTGCTATGCTTGATTGGGTAAGCAAAATTCACAAGGAGAAGAAGCTTGAATTACTTGTAGACAAGGATCTAAAGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTGAAGGTGGCTCTTTTGTGCACACAATATCTTCCGGGCCACAGGCCCAAGATGTCTGAGGTTGTTCGTATGCTTGAAGGTGATGGGCTTGCTGAGAAATGGGAGGCTTCATTAACAGCCCATGATACAACAAAGGGAAAAGCCCACGAGCTCTCTAATTCAAATCGATATTCTGATCTCACTGATGATTCTTCTTTGTTAGCCGAAGCCATGGAGCTCTCAGGCCCAAGATGA 1884 0.4305 MGCSSRLAEPLLILVAFFCLLRSAHALLSPKGINFEVQALMAIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPQSFVISLGIPSQNLSGTLSATIGNLTNLQSVVLQNNNISGPIPSELGKLSMLQTLDLSNNFFNGEIPQSLGHLRTLQYLRLNNNSFSGECPVSVANMAQLSFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGKETNCHGMTLMPMSMDLNTTQSASLSSRHKTHKFADAFGLSLGCISFIVLVFVLFLRWRHKANKQTFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGTLQDGTVVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCVTPTERLLVYPYMCNGSVASRLKGKPVLEWGTRKQIALGAGRGLVYLHEQCDPKIIHRDVKAANILLDEYCEAVVGDFGLAKLLDHQDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVSKIHKEKKLELLVDKDLKNNYDRIELEEIVKVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASLTAHDTTKGKAHELSNSNRYSDLTDDSSLLAEAMELSGPR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272600g00001 627 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Stsc272600g00001 627 Pfam Leucine rich repeat 126 184 IPR001611 GO:0005515
Stsc272600g00001 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 586 - -
Stsc272600g00001 627 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Stsc272600g00001 627 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272600g00001 627 Gene3D Transferase(Phosphotransferase) domain 1 383 594 - -
Stsc272600g00001 627 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Stsc272600g00001 627 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Stsc272600g00001 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Stsc272600g00001 627 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Stsc272600g00001 627 SUPERFAMILY Protein kinase-like (PK-like) 283 576 IPR011009 -
Stsc272600g00001 627 Pfam Protein kinase domain 307 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272600g00001 627 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Stsc272600g00001 627 SMART serkin_6 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272600g00001 627 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Stsc272600g00001 627 SUPERFAMILY L domain-like 36 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272600g00001 Stsc-Chr272600 4293 8985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272600g00001 11 627 Receptor kinase-like Gene Family AT5G16000 74.444 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc272600g00001 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272600g00001 - - gmx:100806650 1043.11