LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272593g00008	ATGTGGCTCCCAAGTACAAAGGCATCATCGGTAATTAGAAAGGGTGGAGGGGGAAATGGATTGGTGGCAGTTGCAATAGATAAGGATAGCAAAGGTAGTCGCTATGCTCTCAAATGGGCTGCCGATAGCCTTCTTGTCAGAGGCCAAACTGTTGTTCTTATCCACGTTTTGCACAAGAATTCTTCCCCTCTTTCTATTGGAGGTAGCCATGCCATAATATGCAACAGTCATAGTCCATCTATATCTCCTCAAAGAGAGCATCTCATCAACATTACTAAGGATCTGTTTCGTACCTTTCACTGCTATTGCACACGTAAAGATATACAATGCCTTGATGTGCTAGTTGAAGACACTGACGTTGTGAAAGGAATAACAGAATATGTGTCTTACGCGGCAATTGAGAACCTAGTGCTTGGTGCAGCGTCAAGGCATGGTTTCATAAGATTCAAGTCATCAAATACACCAAGCAACATATCAAAAGGGGCGCCTGATTTCTGTACAGTGTATATAATATCAAAAGGGAAGATATCTTCAGTTAGGAGTGCTTCCCGTTCGGCAGCACATGCTTCTCCTCTGCTCGGGCATATACAGGCCCTAAATAATGACAACGACAGCGCAAGTGAAACAAGTAGTCAGTTATCGTCAAGGCGTATGAGCTTCAAAGATCATAGAAGATCATCCATGAAACCTCACAGCTGGCAGGATGAATCCTTAAGGTCATCATCATCATCATCATCACAAATTGGAAAAACAATGGGGCCGGTGGGGTTGGGGTTCATGGAGTTAGCCCCAGACTCCGATACAGACATATCATTTGTGAGCTCCGGGAGGCCAAGTACCAGTGGGCGTTCCTCCTCTGTCTTGTATGACTGCATCGACTCTTGCTCTGCTCGTAATTCACGAGTCTCAACCAGTTCCGATCGTAGCTTGGGATCAATCCGCTGTAGCCTCGCTTTCCCAACTTCCCCCGACCCGAATATTTCTCTTTCTTTCTCTCAGGAAAGCATTGGAACCTCCTCCTTTTCTTATTCCTCTCAGAACATGGATGATGTAGAATCTGACATGAAGAGGCTCAAGCTTGAATTAAAACAAACCATGGAAATGTACAGTACAGCGTGCCGAGAGGCACTCACTGCACAACACAAGCTAATGGAACTTAACTCGTGGAGAATTGAAGAGGAAAAGAAATTAGACGAGGCACGATTGGCCCAAGAAGTAGCATTGGCAATCGCAGAGAAAGAGAAAGCAAGGAGCAAAGCAGCCCTGGAAACTGCAGAGGCAGCCAAAAGAATCGCCGAGGCTGAAGCAAACAGAAGAGTAAATGCTGAAATGAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAACTATTGGATAATCTAGCTCAAACCGATGAAAGATATAGGAAATACACAATCCAAGAGATTGAAGCTGCTACAGAGTCCTTTTCTGAATCTCGAAAAATCGGGGAGGGTGGTTATGGCCCTGTCTATAAATGTTACCTTGACCACACTCCTGTGGCTGTCAAGGTTCTACGACAAGATTCTGCTCAGGGGAAATCGCAGTTTCAGCAAGAGATTGACATATTGAGCTGCATACGGCATCCGAATATGGTTCTTCTTGTTGGAGCATGTCCAGAGCACGGCATACTTATCTATGAATACATGGCCAATGGGAGCTTAGAAGATTGCATGTTTCAGAAGAAGGGGATTGTTCTGTCTTGGAAGCTCAGATTTCGGATTGCGGCAGATGTAGCCACTGGCTTACTATTCCTCCACCAGACCAAGCCAGAACCACTGGTACACCGTGATCTAAAGCCAGCCAACATTTTATTAGACCACAACTTTGTAAGCAAGATCAGCGACGTTGGCTTGGCGAGGCTTCTCCCCGCCGTGGCCGAAAATGTGACGCAGTGTTGCATGACGTCAGCAGCGGGAACATTTTGCTACATTGATCCCGAGTATCAGCAGACTGGAATGCTTGGAGTGAAGTCGGACGTGTACTCTTTAGGGATCATTCTTCTTCAGTTATTGACAGGAAGGGCTCCAATGGGGCTGGCTCACCAAGTTGAGCGCTCCATTGAGAAGGAGGCACTGGGTGAGATCCTTGACCCCTCTGTCACAGACTGGCCTCTTGAAGAAGCCTTATGCCTTGCCAAACTCGGACTCACTTGTGCAGAGCTCAGACGAAAAGATAGGCCAGACCTTGCTCAACATGTACTGCCACAACTCAAAAAGCTTAGAGACTTTGCTGAAGGCAATTCCAGCCCAACTTTCTCTTGTAGTAACCTTAGTTATGCAACATCTCCCTATGTCAGTCAAGCTTCTACACAGCAGGATGTAATGAGCGAACCACCCTTTGAACATTCGCCAACTTCAACAAGTCCCTCAACTCCTTCATCCCCAACACAAGAAAATCAAGGTATTAATATTAACTTTTTATACTAA	2445	0.4569	MWLPSTKASSVIRKGGGGNGLVAVAIDKDSKGSRYALKWAADSLLVRGQTVVLIHVLHKNSSPLSIGGSHAIICNSHSPSISPQREHLINITKDLFRTFHCYCTRKDIQCLDVLVEDTDVVKGITEYVSYAAIENLVLGAASRHGFIRFKSSNTPSNISKGAPDFCTVYIISKGKISSVRSASRSAAHASPLLGHIQALNNDNDSASETSSQLSSRRMSFKDHRRSSMKPHSWQDESLRSSSSSSSQIGKTMGPVGLGFMELAPDSDTDISFVSSGRPSTSGRSSSVLYDCIDSCSARNSRVSTSSDRSLGSIRCSLAFPTSPDPNISLSFSQESIGTSSFSYSSQNMDDVESDMKRLKLELKQTMEMYSTACREALTAQHKLMELNSWRIEEEKKLDEARLAQEVALAIAEKEKARSKAALETAEAAKRIAEAEANRRVNAEMKALKEAEEMRKLLDNLAQTDERYRKYTIQEIEAATESFSESRKIGEGGYGPVYKCYLDHTPVAVKVLRQDSAQGKSQFQQEIDILSCIRHPNMVLLVGACPEHGILIYEYMANGSLEDCMFQKKGIVLSWKLRFRIAADVATGLLFLHQTKPEPLVHRDLKPANILLDHNFVSKISDVGLARLLPAVAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIILLQLLTGRAPMGLAHQVERSIEKEALGEILDPSVTDWPLEEALCLAKLGLTCAELRRKDRPDLAQHVLPQLKKLRDFAEGNSSPTFSCSNLSYATSPYVSQASTQQDVMSEPPFEHSPTSTSPSTPSSPTQENQGININFLY	814

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272593g00008	814	MobiDBLite	consensus disorder prediction	233	251	-	-
	Stsc272593g00008	814	MobiDBLite	consensus disorder prediction	199	216	-	-
	Stsc272593g00008	814	Gene3D	Phosphorylase Kinase; domain 1	427	554	-	-
	Stsc272593g00008	814	MobiDBLite	consensus disorder prediction	774	810	-	-
	Stsc272593g00008	814	Pfam	Protein kinase domain	483	715	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272593g00008	814	SUPERFAMILY	Protein kinase-like (PK-like)	466	737	IPR011009	-
	Stsc272593g00008	814	CDD	STK_N	21	174	-	-
	Stsc272593g00008	814	Gene3D	HUPs	15	171	IPR014729	-
	Stsc272593g00008	814	Gene3D	Transferase(Phosphotransferase) domain 1	555	759	-	-
	Stsc272593g00008	814	Coils	Coil	348	368	-	-
	Stsc272593g00008	814	PANTHER	OS02G0152300 PROTEIN	22	797	-	-
	Stsc272593g00008	814	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	454	554	-	-
	Stsc272593g00008	814	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	599	611	IPR008271	GO:0004672\|GO:0006468
	Stsc272593g00008	814	MobiDBLite	consensus disorder prediction	199	260	-	-
	Stsc272593g00008	814	Coils	Coil	408	473	-	-
	Stsc272593g00008	814	ProSiteProfiles	Protein kinase domain profile.	482	743	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272593g00008	814	SMART	serkin_6	482	741	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272593g00008	814	MobiDBLite	consensus disorder prediction	217	232	-	-
	Stsc272593g00008	814	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	23	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272593g00008	Stsc-Chr272593	15361	18354	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272593g00008	1	783	Receptor kinase-like Gene Family	AT1G78940	54.887	0.0	787

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Stsc272593g00008		Pkinase	6.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272593g00008	-		-	ahf:112740428	1335.09