Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272591g00002 ATGCTTGCATCGGAGGGTTTTCTTCTTGACCCTGCAAAGTGCAGCACTCTGAATTTGCAAGAGAAACAAAAACTAGTCCATGAGATTGCTCGCCAGTCAAAAGATGCCCCGAACATGCTTCGATCCTTAACACGCAGGGAACTTCTAGAAATAATTTGTGCTGAACTGGGAAAAGAGAGGAAGTACACAGGATACACCAAAAATCAAATGATTGAACATCTTCTTAAGATCATTTCAAATAATTCCAAGTTGCATGTAACCCAAAACACTCTTGCACATTCCCCGGTGAAAAGTTGTATTGGATCGAAAAGGAAAAAAGGACCAGCATCGCAAGATTTGGATCATGTTTCTCCTGAGGATAGTAAAGAGGAAATAGTGAAAGTCTTATTGTGTCAGAATATTGCATGTAAAGCTACATTGAATACAGAAGATTCCTTTTGCAAGAGATGTTCTTGCTGCATTTGTCACTGTTATGACAATAACAAGGATCCCAGTTTGTGGTTGACTTGCGCAAATGAGGAATCATGTGGAATGTCATGCCATTTACGATGTGCTTTAAGCAATCAATTGTCGGGAATTTCAAAGAGCAGTTTTGGTGTAAAGCTAGAAGGAGCGTTCTTTTGTGTTTCTTGCGGAAAAATTAATGAATTAATGAGCACATGGCGTAAACAGTTATTGGTTGCCAAAGAAGCTAGAAGAGTGGATATACTCACTTCGCGGATAACATTGTCTCACAGAATTCTTATTGGAACAGAAATATACAAGGAAATACATAAGATTGTTGAAACTGCTCTCGAGTTATTGGACAACGAAGTGGGACCGCTGGATCAAGTATGTGCAAGCATGACACGCGGGATTGTGAGCAGGCTCTCTTGTGGTGCTGAGGTTCAGAAGCTGTGCTCCAATGCAATTGAATGTTTTGATTTGAAGATCTCTTCTAATCTCTTCCATGGTCATACGGAGAAGAAAGACACACCAACGTGCTCCATACATTTTGAAGAGTGTCTTCCTACATCTGTTGTCCTTGTTCTTGAATATGACGATAAACTTCTGAAGAACTTTCTAGGCTGCAGGCTTTGGCACCGAATGTCAACAAAGGAGTACCCTGAACAACCCACTTTTATTGTTTTAAGGCCTGAGAAAAGATTCAAATTAGAAAATCTCCTTCCTTCAACTGAGTACTTCTGCAAGGCTTCTCTTTTCAGCAACATTGGGATTTTGGGTGCTGCTGAAGCCAAATGGGTTACACCTTGTGAGTCCGTGAATCCTCTTTTGAATGTTATTAGCCATGGTGGTAACCATTCATCACAGTCACCTCAGAGATCCCTGGTGACGGCTATGCACAAATTTTCACAGGGGAAGATCAGGACAAATGCTGAAAATCACCCTGTAGAATCAGCCAACTCTCACACTAGGGGCAGCTTGGAGGGGTTCTTAACTAGGCCTCCCTCAATCGTACCATTTTCACATAAAACTTCAGTTGAGGTTTTGCCTCCAACACCTTCTAAAATCAATGAAATGAGGCAACTCATTGCTTTGACGCCGAGGAACCGCTTGAAGGAACATGATTATGAGCATTCCGTCAGAGTGGTCAAATGGTTAGAACACCAAGGGCACATTGACGAGCTCTTCAGAATAAGGTTTCTCACTTGGTTCAGCCTCAAGGCTACACAGCAGGAGAGAAGAGTGGTTAGTGCTTTTGTCGATGCACTGATCGATGACCCTTCGAGCTTAGCAGACCAGCTTGTACACACTTTCTTGGACGTGATATGTTCCGAGCAGAAACCTTAG 1791 0.4216 MLASEGFLLDPAKCSTLNLQEKQKLVHEIARQSKDAPNMLRSLTRRELLEIICAELGKERKYTGYTKNQMIEHLLKIISNNSKLHVTQNTLAHSPVKSCIGSKRKKGPASQDLDHVSPEDSKEEIVKVLLCQNIACKATLNTEDSFCKRCSCCICHCYDNNKDPSLWLTCANEESCGMSCHLRCALSNQLSGISKSSFGVKLEGAFFCVSCGKINELMSTWRKQLLVAKEARRVDILTSRITLSHRILIGTEIYKEIHKIVETALELLDNEVGPLDQVCASMTRGIVSRLSCGAEVQKLCSNAIECFDLKISSNLFHGHTEKKDTPTCSIHFEECLPTSVVLVLEYDDKLLKNFLGCRLWHRMSTKEYPEQPTFIVLRPEKRFKLENLLPSTEYFCKASLFSNIGILGAAEAKWVTPCESVNPLLNVISHGGNHSSQSPQRSLVTAMHKFSQGKIRTNAENHPVESANSHTRGSLEGFLTRPPSIVPFSHKTSVEVLPPTPSKINEMRQLIALTPRNRLKEHDYEHSVRVVKWLEHQGHIDELFRIRFLTWFSLKATQQERRVVSAFVDALIDDPSSLADQLVHTFLDVICSEQKP 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272591g00002 596 MobiDBLite consensus disorder prediction 98 118 - -
Stsc272591g00002 596 Pfam PHD - plant homeodomain finger protein 131 246 IPR032881 -
Stsc272591g00002 596 PANTHER VIN3-LIKE PROTEIN 2-RELATED 7 443 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272591g00002 Stsc-Chr272591 23034 27172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272591g00002 9 594 PHD Gene Family AT5G57380 34.416 5.95e-102 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272591g00002 - - gmx:100785502 862.448