LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272590g00001	ATGGCTTCTAATCTTCCAACTAACCCCGCCGCAACAACAGGGTTCGCTACCATGACGATGTCGTCGTTGTTTCAGGAAAAACGTCACCGTTCAGTCTTCGAGCTCTCACCTGGCTTCTTCGACTCTTGCTACATTCTACCTTCTCCTCGCTCTTCTTCTTCTTCTTCGGTTTACGAGCACAACGACAATGATCTTCGCAACGCAAGCCTTGAAACGCCCTCAAACGACGTCGTCGCTGTTGCTCCCCAAAACGCCGTCGTTTCGGCGCCTACGTGGACCTGCAACACCTGTAAGGCTCAATTCGATTCCCTCCAAGACCAGCGTTCGCATTTCAAATCTGATATTCATCGATTCAATGTTAAGCTGACGGTTGCAGGAAAGAATACTGTAAAGGAAGAGGATTTTGAGGTTCTGACATCTGAATTTGTCAAAGACTATGATGTTTCGAGCATATCAGGATCAGAGAGTGACGACGGTGAAAATGAGTCTGAAAATCGCAATGAAGTGCGTGACAAGTCAAGAGAAACTCTTAAACAAAAGCTATTTGTTGGTCTTCAATCGGGGCAAAGAGTTTCTCTCTGGAAGTGCTTGATTATGAATATGACTGATGAGAATGGAAGTGCTGAGAGCGAAGTGTGTGAGAGGTTGAAATCACTGACTCTTGAGTCCAGGGATAATAGTCATTTGCGAATTGTACTGCTTGCATCTGGTGGACACTTTGCTGGTTGTGTTTTTGATGGTGATGCAGTTGTGGCTCACAAGACCTTTCACAGATATGTTGTGAGGGCCAAGGCAGGAAAGAAACAATCATCAAAAGATGCTTCTGGCAGGGCTGCACACTCTGCTGGTGCTTCACTTCGTCGTCATAACGAACTTGCACTAAAAAAGGAAGTTCAAGAACTGCTTACTTCTTGGAAACCTTATTTTGACGCTTCCAATTGCATTTTTATAAATGCACCTTCAAGTAGTCGTCAATTGTTCTATGATGGAGAAAAACCGTACTTCTCCAATCCGCATTGTGCTATCAGAAATATTCCTTTGACTGTTCGGAGGCCTACTTTCAGGGAAGCAAAACGTGTATATTGCCAGTTGACCCAAGTATCCTGTGAAATGGATGAGAAGGAAACTTTACAGAGCAACAAAGAGGGCTTAATATCAATTCCAACTGCTATAGGAAATACCAACCTACCCTCTAGCAAAGGTGACATGATTGAGTTGGATAACAAAGATGAGGCTAAATCTGTTTCAACTAAAAAAGATGCACAACCTGTTTTGAGTGATGAAGAGAGTGAGAATGAGCTACCTGGCATATCAACCCCGTTACATCAAGCAGCAAAATCTGGAGACTCTCAGAATGTCATGGAACTCCTGGAACAGGGCTTAGATCCTTGCGTTAAAGATGAAAGGGGACGAACCCCATATATGTTGGCAAATGAGAAGGAAGTCAGAAATACTTTTAGAAGGTTCATGGCATCAAACCCTGACAAATGGGATTGGCAAGCAGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGCAGAAAAAGAAGCCAAGAGAAAAGCCAGAGCAAAAGAATTAAAGAAATTAAAGAAAGCCAAAGAGAAGAAGGCTCAGGCAGAAGCTGCATTGCTTAAGAATGATTCGAAGGCTGCAGAAAAGCAAGTGACTGCACCAGCTTCTTCTAAGGGACAATCACAATCCAAAAGTGGTGTGAAATTATCTAAAGAGGAGGAAATAAGAAAAGCGCAGGCTGAAGAAAGGGAAAAGAGAGCAGCCGCTGCAGAGAGAAGAATAGCTGCCCTCAAAATTCAAGAGAACAGTTCAACTGCCGCACCTCGCATTTCGGAGCCTAAAGGAGGATTAGCTGGTGAAATTTACTGTTCCTGTTGTAATTTATCACTTGCTGGTAAAGTTCCCTTCCACCGCTATAATTATAACTACTGCAGCACATCATGCATGCACGTACACAGGGAGTTCCTAGAAGATGGATGA	2016	0.435	MASNLPTNPAATTGFATMTMSSLFQEKRHRSVFELSPGFFDSCYILPSPRSSSSSSVYEHNDNDLRNASLETPSNDVVAVAPQNAVVSAPTWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTVAGKNTVKEEDFEVLTSEFVKDYDVSSISGSESDDGENESENRNEVRDKSRETLKQKLFVGLQSGQRVSLWKCLIMNMTDENGSAESEVCERLKSLTLESRDNSHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVQELLTSWKPYFDASNCIFINAPSSSRQLFYDGEKPYFSNPHCAIRNIPLTVRRPTFREAKRVYCQLTQVSCEMDEKETLQSNKEGLISIPTAIGNTNLPSSKGDMIELDNKDEAKSVSTKKDAQPVLSDEESENELPGISTPLHQAAKSGDSQNVMELLEQGLDPCVKDERGRTPYMLANEKEVRNTFRRFMASNPDKWDWQAAKVPSALTKEMEESQAAKQAEKEAKRKARAKELKKLKKAKEKKAQAEAALLKNDSKAAEKQVTAPASSKGQSQSKSGVKLSKEEEIRKAQAEEREKRAAAAERRIAALKIQENSSTAAPRISEPKGGLAGEIYCSCCNLSLAGKVPFHRYNYNYCSTSCMHVHREFLEDG	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272590g00001	671	ProSitePatterns	Zinc finger C2H2 type domain signature.	94	116	IPR013087	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	561	578	-	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	508	527	-	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	545	599	-	-
	Stsc272590g00001	671	ProSiteProfiles	Ankyrin repeat profile.	439	468	IPR002110	GO:0005515
	Stsc272590g00001	671	Coils	Coil	583	612	-	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	149	172	-	-
	Stsc272590g00001	671	Pfam	Vms1-associating treble clef domain	634	666	IPR041540	-
	Stsc272590g00001	671	Pfam	Bacteroidetes VLRF1 release factor	231	369	IPR041175	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	409	448	-	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	432	448	-	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	409	426	-	-
	Stsc272590g00001	671	SUPERFAMILY	beta-beta-alpha zinc fingers	89	124	IPR036236	-
	Stsc272590g00001	671	PANTHER	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	25	669	IPR047139	-
	Stsc272590g00001	671	SUPERFAMILY	Ankyrin repeat	439	491	IPR036770	-
	Stsc272590g00001	671	Coils	Coil	508	562	-	-
	Stsc272590g00001	671	ProSiteProfiles	Ankyrin repeat region circular profile.	439	468	-	-
	Stsc272590g00001	671	Gene3D	-	427	550	IPR036770	-
	Stsc272590g00001	671	MobiDBLite	consensus disorder prediction	579	599	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272590g00001	Stsc-Chr272590	2503	14772	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272590g00001	27	618	C2H2 Transcription Factor Family	AT1G01930	54.620	0.0	565

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272590g00001	K26089		-	gmx:100527709	826.624