Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272586g00001 ATGGATAGCAGGTTGGCAAACTCTCCTTTTGGTTCTCTTAAATTGCCCGTTGGTTACCGATTCTGCCCCTCGGACGAAGTTTTTGTCTCTTGGTACCTAAAAAACAAGGCCCTTTCAAAAACATTGGGTTTTGATGTTGTTCCTCAGTTCGATGTCTTCAAAACTGAGCCTAAGAATCTCCCTTCAGGTGGAAGGGTGTTTCTAGACACAAGGTACTTTTACTTTGATATGAAAGAACGTGTGTTTGAAGACAAAAGCAAGAGGGAAGCAGGGAAAGGGCACTGGAAAACCGTAGGGAAAGGGAATAAGGAGATCGTAAATAAGAAGAACAACAAAGTCATTGGCTTAAAGACAAAGCTAGTTTTCTGGAGGAAGAAGAGCCGCAACCACTTTGTCAAAACTAAGTGGATTATGTTTGAGTACCGCGTTTTTCTCCCAACAACAACAACCACAACTTCCAACCCATCTCAGACATTGTCATCATGGGCTGGATACAAAATATATCTGAAGAAAGATAAGAGAAAGAAGAAAAAGGCAAAGCTTTTTTGTGATAAGGAAAGCAGTGATGATGATGAGGATGAAGATGTGGAAAAAGCAGAAGAAGAAGAGAATTTTGCAGATGAGATAAGTGGAATTAACTCAGGCCCTCCTTCACCAACTTCATCTGATGAATCCTCTGTTACAAGTTGA 690 0.4072 MDSRLANSPFGSLKLPVGYRFCPSDEVFVSWYLKNKALSKTLGFDVVPQFDVFKTEPKNLPSGGRVFLDTRYFYFDMKERVFEDKSKREAGKGHWKTVGKGNKEIVNKKNNKVIGLKTKLVFWRKKSRNHFVKTKWIMFEYRVFLPTTTTTTSNPSQTLSSWAGYKIYLKKDKRKKKKAKLFCDKESSDDDEDEDVEKAEEEENFADEISGINSGPPSPTSSDESSVTS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272586g00001 229 MobiDBLite consensus disorder prediction 211 229 - -
Stsc272586g00001 229 Gene3D NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
Stsc272586g00001 229 MobiDBLite consensus disorder prediction 175 229 - -
Stsc272586g00001 229 PANTHER NAC TRANSCRIPTION FACTOR 56 15 192 - -
Stsc272586g00001 229 SUPERFAMILY NAC domain 9 170 IPR036093 GO:0003677|GO:0006355
Stsc272586g00001 229 ProSiteProfiles NAC domain profile. 15 170 IPR003441 GO:0003677|GO:0006355
Stsc272586g00001 229 MobiDBLite consensus disorder prediction 187 207 - -
Stsc272586g00001 229 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272586g00001 Stsc-Chr272586 23609 26173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272586g00001 11 171 NAC Transcription Factor Family AT5G13180 36.810 2.29e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc272586g00001 NAM 8.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272586g00001 - - ahf:112697144 262.307