Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272585g00001 ATGGCCGCTGTTCGCTCTAACAACCACAACCACAACCGCCACGTCATCTGCATGTCCTTGATCATTTCCGTCTCTCTCTACAACCTCCCAGTGTCTCTCTCAGGCGACACGGATGCCCTTCTAAAGCTGAAACAATCCCTCACCAACGCCGATCGCGTGCTCGACACGTGGGTACCCAACGCGTTACCTTGCAGCTGGCTCGGCGTTGTCTGCTTCAACGGCATGGTAACGGGCCTTCGCCTTTCCGACATGGGCCTCTCAGGTACCATCGACATAGACGCTCTTGTCGAGATACCCGGGCTCAGGACCCTAAGCTTCACCAACAACACCTTCACGGGCCCAATCCCGGACTTCAGCAGGCTCGGCGCCATCAAGGCCCTCTTGCTCTCCTACAACCAATTCTCCGGGATCATCCCTTCGGACTTCTTCACCAAATTAGCCTCCCTCAAGAAAATTTGGATCGATTCCAATAGCTTCTCAGGCCCGATACCCGAATCTTTGATGGAGCTTGAGCTTCTCAAAGAGCTTCACATTGAGAACAACCACTTCTCCGGGAGGATACCTACTGTCAAGGAAGATTTGCTCTCTTTCGACGCTTCAAACAACAACCTCGAAGGTCCTATTCCGGAATCCCTTGCTAAGTTCGGCGAGAACGCATTTTCCGGTAGCGGCAACGAGAAGCTTTGCGGGAAGCCATTGAAGAGAGCCTGCGATGGTAACATCTTGCCCTCGTTTTCTCCGGACAAGAACCAAGGGTCGGGATCCGGGTCCGGGTCCGGGTGGGGATTTAGGATGATTTTGTTTCTATTCTTGGCTGTGGTGGTGGCGTTTCTGTTCGTGTTCATGAAGTCGCGGCGGAAGAGCGATGATAATGAGTTCGGGTTGATGGGGAGAATAAACAGTACGGACTCGATGGTGGACATTCATGTGGCGAGCTCGAACGGTTACAGAGCGCCGGAGAGCGAGGGAGCGGCGGCGGCGGGGATGGCGAAGAGAGGGGTGGGGGGCGGAGGGGAGTCGAACAGGGGGGCTCGGACGAAGGGAGGGGGAATGACGGACCTTGTAATGGTGAACGACGAGAGAGGGGTGTTTGGGTTGCAGGATTTGATGAAGGCATCGGCGGAGGTGCTGGGGAACGGGGGGTTGGGGTCGGCGTACAAGGCGGCGATGACGAACGGGCTGTCGGTGGTGGTGAAGAGGATGAGGGATATGAATAAAATGGGAAGGGATGTGTTTGATGCTGAGATGAAGCAGTTTGGGAGGATGAGGCATAAGAATATCTTGGGGCCTCTTGCTTACCATTATCGCAGGGAGGAGAAGCTCTTCGTTACTGAGTATATGCCCAAAGGCAGCTTGCTTTACGTCTTGCATGGTGACAGAGGAACAGCCCATTCAGAGTTGAACTGGCCAACCAGGTTAAAGATTGTGAAGGGAATAGCAAGAGGGTTGTCGTACCTCTACACTCAATTTTCCACCTATGACCTTCCCCATGGAAACCTCAAGTCCACCAATGTCCTCCTAAGTGATGACTATGAGCCTCTCTTAGGTGACTTTGGATTCCACCCTCTCATCAACCCCACAGCCGCCGGTCAAGCAATGTTTGCCTACAAATCTCCGGACTATATCCAGTACCAGAAAGTTTCTCAGAAGACCGACGTCTACTGCCTCGGAGTCATCATCCTCGAGATCATTACTGGCAAGTTCCCTTCCCAGTATCATAGCAATGGAAAGGGTGGCACTGATGTTGTTCAACGGGTAGTCACGGCGATTTCGGAGTCAAGGGAGGCAGAAGTCATTGATCCAGAGTTGCAAGGGAACATGGGATCGCAGAGCCAGATGTTGCAGCTTATCCACATTGGTGCTGATTGCACTGAGAGCAATCCTGACCAAAGACTTAGCATGAAGGAAGCCGTTAGAAGGATAGAGGAGGTTCAAGTGTGA 1941 0.5301 MAAVRSNNHNHNRHVICMSLIISVSLYNLPVSLSGDTDALLKLKQSLTNADRVLDTWVPNALPCSWLGVVCFNGMVTGLRLSDMGLSGTIDIDALVEIPGLRTLSFTNNTFTGPIPDFSRLGAIKALLLSYNQFSGIIPSDFFTKLASLKKIWIDSNSFSGPIPESLMELELLKELHIENNHFSGRIPTVKEDLLSFDASNNNLEGPIPESLAKFGENAFSGSGNEKLCGKPLKRACDGNILPSFSPDKNQGSGSGSGSGWGFRMILFLFLAVVVAFLFVFMKSRRKSDDNEFGLMGRINSTDSMVDIHVASSNGYRAPESEGAAAAGMAKRGVGGGGESNRGARTKGGGMTDLVMVNDERGVFGLQDLMKASAEVLGNGGLGSAYKAAMTNGLSVVVKRMRDMNKMGRDVFDAEMKQFGRMRHKNILGPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTAHSELNWPTRLKIVKGIARGLSYLYTQFSTYDLPHGNLKSTNVLLSDDYEPLLGDFGFHPLINPTAAGQAMFAYKSPDYIQYQKVSQKTDVYCLGVIILEIITGKFPSQYHSNGKGGTDVVQRVVTAISESREAEVIDPELQGNMGSQSQMLQLIHIGADCTESNPDQRLSMKEAVRRIEEVQV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272585g00001 646 Gene3D Ribonuclease Inhibitor 35 142 IPR032675 -
Stsc272585g00001 646 Pfam Protein kinase domain 375 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272585g00001 646 FunFam Nuclear pore complex protein NUP107 33 189 - -
Stsc272585g00001 646 SUPERFAMILY Protein kinase-like (PK-like) 375 641 IPR011009 -
Stsc272585g00001 646 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 645 IPR046959 -
Stsc272585g00001 646 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272585g00001 646 CDD STKc_IRAK 377 643 - -
Stsc272585g00001 646 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Stsc272585g00001 646 Gene3D Ribonuclease Inhibitor 143 259 IPR032675 -
Stsc272585g00001 646 Gene3D Transferase(Phosphotransferase) domain 1 447 646 - -
Stsc272585g00001 646 SUPERFAMILY L domain-like 51 215 - -
Stsc272585g00001 646 Gene3D Phosphorylase Kinase; domain 1 340 446 - -
Stsc272585g00001 646 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272585g00001 Stsc-Chr272585 3280 5606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272585g00001 15 646 Receptor kinase-like Gene Family AT3G42880 47.833 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc272585g00001 Pkinase 1.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272585g00001 - - gmx:100790660 758.444