Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272581g00006 ATGTCGAGCGAGGTAATGGCGAAGAGATGGGGAAAGCCAAGTGTGTTTAGAAATGACAGAGATCCCATGTTTGGTAGTGGCTTGGTCATGGTTGAAGGCAACGATTGGGTTCGCCATCGCCACATTGTTGCACCCGCATTCAATCCCATCAATCTCAAGGCTATGGCAAGCGTAATGAGTGAGTCCACAAATGAAATGATATGTCGATGGAGCAGCCAAATTCAGATGGGAAAACCCGAAATCAACGTTGAGAGTGAGGTCATAACCCTCGCCGGAGAGATCATCGCAAGAACTATCTTCGGCATGAAAGAGCAGTCCGCTAGAGACGTATTCGACAAGCTTAGAGCCCTTCAAATGACTCTCTTCAACACCAATCGCTACGTCGGCGTTCCATTCGGCAAGTACTTCAAGGTCAAGAAAACCCTAGAGGCCAAGAAATTAGGCAAAGAAATCGACCACCTCTTGCTCTCTATCATTCAAGCTCGCAAGAACTCACCCAATAACAAGGATTCTCAGAATGATTTGCTGGGTTTGTTGCTCCAAGAAAATAATCATGATGGTTCTCGTAAGGCTCTTACAATGAGGGAGCTTGTTGACGAATGCAAGACGTTCTTCTTTGGCGGACATGAAACCACGGCGCTTTCTATCACCTGGACTCTGCTGCTTCTGGCTATGCATCAAGATTGGCAGAAGCAACTGAGAGATGAGATTCAACAAGTTCTTGCTCAACACAAGCACGTTATTGATCTCGCCATGCTCTCTAGCTTAACCAGGATGAAATGGGTGATGAATGAAGCTCTAAGGCTGTACCCTCCATCACCAAATGTGCAAAGGCAAGCAAGAGACGACATTCACATTGAGGGTTTGACGGTCCCTAAAGGAACCAACATGTGGATCGACGTGGTTGGCATGCACCATGACAAGGAGCTGTGGGGAGAGGATGCAAATGAGTTCAAGCCGGAGAGATTCATGGAAGATGTGAATGGTGGATGCAAACACAAGATGGGTTACTTGCCATTTGGATTTGGAGGGAGAATGTGTGTTGGTAGG 1050 0.4695 MSSEVMAKRWGKPSVFRNDRDPMFGSGLVMVEGNDWVRHRHIVAPAFNPINLKAMASVMSESTNEMICRWSSQIQMGKPEINVESEVITLAGEIIARTIFGMKEQSARDVFDKLRALQMTLFNTNRYVGVPFGKYFKVKKTLEAKKLGKEIDHLLLSIIQARKNSPNNKDSQNDLLGLLLQENNHDGSRKALTMRELVDECKTFFFGGHETTALSITWTLLLLAMHQDWQKQLRDEIQQVLAQHKHVIDLAMLSSLTRMKWVMNEALRLYPPSPNVQRQARDDIHIEGLTVPKGTNMWIDVVGMHHDKELWGEDANEFKPERFMEDVNGGCKHKMGYLPFGFGGRMCVGR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272581g00006 350 Pfam Cytochrome P450 11 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS P450 superfamily signature 207 224 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS P450 superfamily signature 338 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS P450 superfamily signature 261 272 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS P450 superfamily signature 347 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS E-class P450 group I signature 196 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS E-class P450 group I signature 337 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS E-class P450 group I signature 347 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS E-class P450 group I signature 301 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PRINTS E-class P450 group I signature 216 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 Gene3D Cytochrome P450 1 350 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 349 - -
Stsc272581g00006 350 SUPERFAMILY Cytochrome P450 11 350 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272581g00006 350 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 340 349 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272581g00006 Stsc-Chr272581 22921 24882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272581g00006 1 350 Cytochrome P450 AT5G52400 58.689 2.75e-154 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272581g00006 - - gmx:100785284 556.984