Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272581g00004 ATGGTGAGTAAGAGGCAGCGACTTGCACAAAAGCGATTCAAAGAGGCGAACCCCGAACTCTTTCCCAAGCCCGAACCCACACCTCCCAAGGACCCTGACAAGAAGAAGAAAAAGAAGAAATTAAAGAGCAGCTCTATTAAGCGCAAAAGCGATGGCTCCGGCGTCTCTAAGAAGCCTTTCAAGAGCAGTTACCGAAAACACCCTCTCAGAGTACCTGGCATGAAGCCCGGTGACACCTGCTTCATCTGCAAGGCCGCTGACCATATTGCCAAGTCTTGTCCTCAAAAAGCTGAATGGGAGAAGAATAAGATATGCTTGCGGTGTCGACGGCGTGGTCACCGAGCTAAGAATTGCCCTGAAGTTCAAAATGGTGCCAAGGATGACAAGTATTGTTACAATTGTGGAGAAACTGGCCATTCACTTGCAAATTGTCCCCACCCTCTTCAAGAAGGAGGGACAAAGTTTGCAGAGTGCTTTGTCTGTAAACAACAAGGACACTTGAGTAAAAATTGCCCTCAAAATGCTCATGGCATCTATCCTAAGGGTGGTTGCTGTAAAATATGTGGTGGCGTGACACATTTGGCAAGGGATTGTCCCGAAAAAGGGAAGAGAGCACCTTTTGCTGCTAATGGGCCTGCTGATGGATCAATGAGACTGAGAAGCGAACAGAGGCCTTGCGGAACGGTAACCAAATTTGCGAGCGGGGATGACATTGAGGATGACTTCATCACAGATGACATAAAGAGTGGAGACAAGGACAAGTCCTCAAAGTCCAAAGACGGTCAAGTAAAACCAAAGAAGGGTCCTAAAGTTGTGAACTTCAGCTAA 828 0.4734 MVSKRQRLAQKRFKEANPELFPKPEPTPPKDPDKKKKKKKLKSSSIKRKSDGSGVSKKPFKSSYRKHPLRVPGMKPGDTCFICKAADHIAKSCPQKAEWEKNKICLRCRRRGHRAKNCPEVQNGAKDDKYCYNCGETGHSLANCPHPLQEGGTKFAECFVCKQQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPEKGKRAPFAANGPADGSMRLRSEQRPCGTVTKFASGDDIEDDFITDDIKSGDKDKSSKSKDGQVKPKKGPKVVNFS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272581g00004 275 Gene3D - 125 178 - -
Stsc272581g00004 275 SMART c2hcfinal6 130 146 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 SMART c2hcfinal6 79 95 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 SMART c2hcfinal6 157 173 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 ProSiteProfiles Zinc finger CCHC-type profile. 131 145 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 MobiDBLite consensus disorder prediction 1 71 - -
Stsc272581g00004 275 MobiDBLite consensus disorder prediction 245 266 - -
Stsc272581g00004 275 ProSiteProfiles Zinc finger CCHC-type profile. 158 173 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 SUPERFAMILY Retrovirus zinc finger-like domains 73 122 IPR036875 GO:0003676|GO:0008270
Stsc272581g00004 275 SUPERFAMILY Retrovirus zinc finger-like domains 152 201 IPR036875 GO:0003676|GO:0008270
Stsc272581g00004 275 Gene3D - 73 124 - -
Stsc272581g00004 275 PANTHER OS04G0555800 PROTEIN 1 274 - -
Stsc272581g00004 275 ProSiteProfiles Zinc finger CCHC-type profile. 105 120 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 Pfam Zinc knuckle 79 95 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 Pfam Zinc knuckle 130 146 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 Pfam Zinc knuckle 158 173 IPR001878 GO:0003676|GO:0008270
Stsc272581g00004 275 FunFam Zinc finger CCHC-type-containing 9 155 206 - -
Stsc272581g00004 275 MobiDBLite consensus disorder prediction 207 275 - -
Stsc272581g00004 275 SUPERFAMILY Retrovirus zinc finger-like domains 124 149 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272581g00004 Stsc-Chr272581 11484 14550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272581g00004 105 201 C2H2 Transcription Factor Family AT5G20220 28.947 4.55e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272581g00004 - K17578 aip:107616096 468.388