Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272577g00004 ATGACACCTGAGACTGGAACATATCGTTGGATGGCCCCGGAGATGATCCAGCATAGGCCTTACACTTCAAAAGTGGATGTATATAGCTTTGGGATTGTTCTTTGGGAGCTCATCACTGGATTGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTCAACAGAAATGTTCGGCCAATCATTCCCAATGATTGCCTACCTGTTCTTCGTGAGATCATGACCAGATGTTGGGATCCCAACCCTGATGTTAGACCACCGTTTACTGAGATTGTAGGAATGCTTGAGAATGCAGAGATGGAGATCATGACGACAGTTCGGAAGGCCCGGTTTAGGTGCTGCATGACTCAACCAATGACTACTGACTGA 378 0.4656 MTPETGTYRWMAPEMIQHRPYTSKVDVYSFGIVLWELITGLLPFQNMTAVQAAFAVVNRNVRPIIPNDCLPVLREIMTRCWDPNPDVRPPFTEIVGMLENAEMEIMTTVRKARFRCCMTQPMTTD 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272577g00004 125 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Stsc272577g00004 125 PANTHER SERINE-THREONINE PROTEIN KINASE 1 100 - -
Stsc272577g00004 125 Pfam Protein tyrosine and serine/threonine kinase 7 97 IPR001245 GO:0004672|GO:0006468
Stsc272577g00004 125 SUPERFAMILY Protein kinase-like (PK-like) 3 98 IPR011009 -
Stsc272577g00004 125 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272577g00004 125 SMART tyrkin_6 1 98 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272577g00004 Stsc-Chr272577 17741 19518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272577g00004 1 125 MAP Kinase Kinase Kinase AT2G24360 83.200 2.90e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc272577g00004 PK_Tyr_Ser-Thr 2.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272577g00004 - - gmx:100788536 254.218