Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272573g00004 ATGCCTGACCCTTTGGAACAGAAGGGAAAAGATATCACCGAATTAAACGGTAACATACTTCAATCACAGCCCCATAACTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATTGAAAATTGTCCTGTTCCGAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCGGTAATTCAAGGAACTGTTATGGTATTTTCTGCTTACGGGGACTTCAATGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCCAATGGGAGAAAAGATGCTGCCGATAAAGCAATCTTGGTTGACATGTTTTTATTTGCTCTTGACAACCCTCCCCCATCGTCTATTATGCTAATATCAGGAGACGTTGACTTCGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTGGTCATCCCGTCTGGCGTGGGTGTTTCATCTGCTTTATGCAATGCTGGTAAATTTGTCTGGGATTGGCCTAGCGTTGCTCGTGGTGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGCACCACCTCGTGGAGGTTCAGTTGAGCTTGCTGGATATTTTATGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTTTATAACTCAAGGGATTTCTCAGTGGTTTCACAATCTCTATCTGAATACAATTGTGCTGCATCGAATGCTGCTGGCCCACTGACAACTGCGAGATCACACAGCCTTCCACCTGGGATGCTTGATGTTTCAGGAATATCTATGCCTTCTAATGACAATAATGAAGGGAACTCTTGGGGCCCCATGTCTAGCGATTTAAACGTTCTCAAAGGCCAGTTGGTAAGGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGTCTCGAGTTCCAACAGAGTATCAGAAAACTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCGGTTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATCCAATGGCAGTGGAAGGGAAAGGGCAGCGCAAATTTGTGTATCTCAAAAACTTCAAGGTAGGCCCAAGCGCTCCCCCACTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTACCGGAAGATAATGCGAATGCTGTCACTGGTGGTGGCTCTTCGGATGAGTTCTCAGATGAAGAAAGACTAGTCATAGAAGAACATGATGAGAGAAATTGTGTAGGAAAGGGTATTCAAAGGAGAGTATCTAGGTATGATATCGACGACCGTGCTCTTGAGCAGTTCAAGTACGAGCTTCAAGAGATTCTAGTAAGCTACTCGTGTGGAATATTCCTAGGTTGTTTCGAGGACATATACCAACAACGGTACAAGAGACGATTGGAATATCACAGATTTGGAGTGAACAAGTTGGAAGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAGTAGGGTGTTAG 1554 0.4427 MPDPLEQKGKDITELNGNILQSQPHNSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIQGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSGVGVSSALCNAGKFVWDWPSVARGEGFVPPAKALAPPRGGSVELAGYFMGCHINDNFEGQNEEEAIVYRGMSQRFYNSRDFSVVSQSLSEYNCAASNAAGPLTTARSHSLPPGMLDVSGISMPSNDNNEGNSWGPMSSDLNVLKGQLVRLLELSGGCLPLSRVPTEYQKTYGRTLYVSDYGAVKLVNLFKKMGDPMAVEGKGQRKFVYLKNFKVGPSAPPLALAKKDKKGKGLPEDNANAVTGGGSSDEFSDEERLVIEEHDERNCVGKGIQRRVSRYDIDDRALEQFKYELQEILVSYSCGIFLGCFEDIYQQRYKRRLEYHRFGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPVGC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272573g00004 517 Pfam NYN domain 32 171 IPR021139 GO:0004540
Stsc272573g00004 517 CDD PIN_limkain_b1_N_like 32 157 - -
Stsc272573g00004 517 Gene3D - 439 511 IPR041966 -
Stsc272573g00004 517 Gene3D - 295 367 IPR041966 -
Stsc272573g00004 517 ProSiteProfiles OST-type HTH domain profile. 442 516 IPR025605 -
Stsc272573g00004 517 PANTHER LIMKAIN B LKAP 23 481 IPR024768 GO:0005777|GO:0010468
Stsc272573g00004 517 CDD LOTUS 298 367 - -
Stsc272573g00004 517 Gene3D - 24 177 - -
Stsc272573g00004 517 ProSiteProfiles OST-type HTH domain profile. 297 369 IPR025605 -
Stsc272573g00004 517 Pfam OST-HTH/LOTUS domain 443 507 IPR025605 -
Stsc272573g00004 517 Pfam OST-HTH/LOTUS domain 299 363 IPR025605 -
Stsc272573g00004 517 MobiDBLite consensus disorder prediction 383 407 - -
Stsc272573g00004 517 CDD LOTUS 443 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272573g00004 Stsc-Chr272573 24035 25588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272573g00004 30 182 C2H2 Transcription Factor Family AT5G61190 43.137 1.61e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272573g00004 - - ahf:112715639 922.924