Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272573g00003 ATGCTCTGCTGGCTTCCCTTCTTCTCTGTTGGATTTGCTGCTTTTCTTGGAATGCACCTCCCTCTAGTAATGGCTGATTGCCCTTTGGATTTTACCGGTTCAAACTTTACACTGGTATCCTCTTTATGCTCTAACCAAGGTGATAGGGGAAACTGTTGCCGCTACATTAATGCCAATGTTGCAATTTCTGTTGCTCGTTTCGCTAATGCAACGAGCATCCTGGGGGTCCCTCCAAATGCCTCTGATTCTTGCCTCCAGACTATATATGAGAAGTTACAACTTTATGGAGTTCCACAAAATGCAACTGCTTTCTGTGGTTTTGGGACCAAAATTCCTGTTAATTATGAATGTAAGGGAAGAACTAGTGTCATGCAAATGCTGCAATCTCCTAGATTTGCGGAGGTTTCGAAAAATTGCAAAGTGTCACTTGGAGAGGAAACAAAATGTAAGAAGTGCTTAAATGCAGGCTTCGGTTATCTGCATCATCTGGGAATTAATGATAACATAACACTCAGTACATGTCGTGATGCCACTTTCGCTGCACTGGCAAGCCAACTTGATCACCCTTCTACAACTGACATTGCAAGCTGTTTCTTTGGTGTTCAAGGACTTCTTGGGCCTCCTGTTTCAGTGTCATCATCCCCATCCATGCCTAGTCCTGAGGGTTCTCCAAGTCCAGTGGTTGCTGATAGTCCAAGCCAGTTATTGTTAGGTGCACCTTTTAAGGGAAACCACCATACGTATCACTTGACATTAGTTCCAGGTATTGCTATTGCCATCACAGCTGTTGCTGTTGTGATGCTCATAGTCTTGATAGTTCTAATTCGCCAAAAAAGCAGAGAGCTAGATGATCATGATGATTTCAGGAAAACTTCTTCAAAAACCTTGCCTTCTTTTGCAACATGGAAGTTTCAGGAAGGTTCTTCAAATATGTTCCGAAAATTCAGGTACAAGGAGATAAAGAAGGCAACAGAGGACTTTAGCACTGTCATTGGGCAAGGGGGATTTGGAACAGTGTATAAAGCTCATTTTAGTGATGGCCTTGTGGCAGCGGTGAAGCGCATGAATAGAGTGTCTGAGCAGGGAGAGGATGAGTTCTGCCGAGAAATTGAACTTCTTGCTCGGCTGCACCATCGGCATCTTGTATCTTTAAGAGGCTTCTGCATCAAGAAACATGAGAGGTTTTTGATGTATGAGTACATGGGGAATGGAAGCTTGAAAGATCATCTTCATTCTCCTGGTAGAACACCGCTAAGTTGGCGAACTCGAATCCAAATTGCGATTGATGTAGCTAATGCATTGGAGTACCTTCATTTCTACTGTGATCCTCCTCTGTGCCATAGAGACATTAAGTCTAGCAACACTTTACTGGATGAGAACTTAGTTGCTAAGATAGCCGATTTTGGCCTTGCACAAGCATCAACAAATGGTTCGATATGCTTTGAACCTCTAAACACCGAAATCCGAGGAACTCCAGGTTATATGGATCCAGAATATGTTGTTACTCAAGAGCTCACTGAGAAAAGTGACATATACAGTTTCGGGGTGTTACTACTGGAACTCGTGACGGGAAGGCGAGCTATTCAGGATAATAAGAACTTGGTGGAATGGGCACAACCATTTATGGAATCGGAAACCAGATTATTGGAGCTAGTAGATCCTAATGTGAGGGAGTCTTTTGACTTGGACCAACTCCACACAGTAGTGTATATAGTAGGATGGTGCACACAGAGAGAAGGAAGGGCAAGGCCTTCGATAAAACAGGTCCTTCGCCTTCTTTATGAGACGTCAGAACCGATGCACAGCGGCTTCCTCCAATCCGGCGATGATGAAGATTGTCAGGGAAGTCAGCAGAGAGGCAGAAGAAGCAAGGGAAAAACGCACCGGAATGAAGCAATTTTCAACAGTGGGGATGGAAGATACCTTGCTTCGTCCTCAAGTACGTCTCGATCATATTGCAGTAGGACCTTTTTACTTGACAATGGCTCGCCGCAGTCCCCGCCGAATATTTTCTCAGTTTAA 2022 0.4407 MLCWLPFFSVGFAAFLGMHLPLVMADCPLDFTGSNFTLVSSLCSNQGDRGNCCRYINANVAISVARFANATSILGVPPNASDSCLQTIYEKLQLYGVPQNATAFCGFGTKIPVNYECKGRTSVMQMLQSPRFAEVSKNCKVSLGEETKCKKCLNAGFGYLHHLGINDNITLSTCRDATFAALASQLDHPSTTDIASCFFGVQGLLGPPVSVSSSPSMPSPEGSPSPVVADSPSQLLLGAPFKGNHHTYHLTLVPGIAIAITAVAVVMLIVLIVLIRQKSRELDDHDDFRKTSSKTLPSFATWKFQEGSSNMFRKFRYKEIKKATEDFSTVIGQGGFGTVYKAHFSDGLVAAVKRMNRVSEQGEDEFCREIELLARLHHRHLVSLRGFCIKKHERFLMYEYMGNGSLKDHLHSPGRTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENLVAKIADFGLAQASTNGSICFEPLNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLELVTGRRAIQDNKNLVEWAQPFMESETRLLELVDPNVRESFDLDQLHTVVYIVGWCTQREGRARPSIKQVLRLLYETSEPMHSGFLQSGDDEDCQGSQQRGRRSKGKTHRNEAIFNSGDGRYLASSSSTSRSYCSRTFLLDNGSPQSPPNIFSV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272573g00003 673 SUPERFAMILY Protein kinase-like (PK-like) 306 596 IPR011009 -
Stsc272573g00003 673 FunFam Putative receptor-like protein kinase 401 601 - -
Stsc272573g00003 673 ProSiteProfiles Protein kinase domain profile. 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272573g00003 673 Pfam SPARK 25 163 IPR043891 -
Stsc272573g00003 673 MobiDBLite consensus disorder prediction 210 229 - -
Stsc272573g00003 673 Pfam Protein kinase domain 329 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272573g00003 673 MobiDBLite consensus disorder prediction 601 632 - -
Stsc272573g00003 673 SMART serkin_6 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272573g00003 673 PANTHER OS01G0750732 PROTEIN 171 617 - -
Stsc272573g00003 673 FunFam Putative receptor-like protein kinase 293 400 - -
Stsc272573g00003 673 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Stsc272573g00003 673 Gene3D Transferase(Phosphotransferase) domain 1 401 613 - -
Stsc272573g00003 673 CDD STKc_IRAK 331 593 - -
Stsc272573g00003 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Stsc272573g00003 673 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272573g00003 Stsc-Chr272573 19206 23687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272573g00003 22 672 Receptor kinase-like Gene Family AT3G19300 60.000 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Stsc272573g00003 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272573g00003 - - ahf:112715638 1236.48