Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272560g00003 ATGTGTGGTGGTAGTAATGGAAAAGGAGAATCGTCCTTGTTCACGGTAAGGGTGACGAATCAAGAAGTTATTGCGGCGGTTTTGCCAGTGCAAGAACACTGGTTGCCATTCTCAAACCTTGATCTCCTTCTTCCACCCATTGATGTTAGTGTCTTTTTTTGCTACAATAACACTAACAGGATGAGCTTTGGGTCCATGTTAAGGTCCCTTAAGAATGCATTGGGTCAAGCTCTGGTTTCATATTATGCCTTTGCTGGTGAGGTGGTGCACATCAACTCCATGGGTGAGCCTGAGCTTCTTTGCAATAACCGCGGTGTTGATTTTGTTGAGGTTGAGGCTGATCTTCATCTTCAAAATCTTAACTTTTACAACCCCGACGAATCCATTCAAGGCAAGCTTGTTCCAATCAAGAAGCACGGCGTCCTTGCTATTCAGTTCTGTTATAAAAACACTTCTCTCTCGGCAACATATTTAAAATGTGGCGGGATAATGGTGGCATGCACCTTCGATCATCGCATAGCAGATGCATACTCAGCAAACATGTTCCTAGTTTCATGGGCCCAGATATCCCGGCCCATCAAGCCCGCCACCTTGGCACCACCGTGTTTTCGCCGCTCCCTCCTCAACCCTCGACGCCCTCTCTGCATCCACCCTTCCCTCGACGACATGTATGTCCCCATTTCCATTTCACCGCCGCCGTTCGAACCCGAACCCGATAATTCCGACTCACTCATAAGCCGGATATATTACATCACGGCCGATCAACTTTGCCGCATGCAATCACTTGCAAGCTCATCATCATCACTAGATCATATCAAGAACCGGACAAAGCTTGAATCTTTCTCCGCGTTCTTGTGGAAGATGGTTGCCATGGCTGCTGCATCCTCCTCCTCCACCACCACCCTTACCGGTGATTGCGGAAAAAGGTTTGTTGTCAAGATGGGTGTGGTGGTTGATGGAAGGAAGAGGCTTAGCAATTGTGACCAAAGCAAAGAAGCAACGATGAATAGTTATTTTGGTAATGTTCTTTCTGTCCCTTTTGGCGGGAAACCGGTGGAGGACTTGGTGGAGAAGCCGTTGAGTTGGGCGGCGGAGGAGGTTCACAAGTTTCTGGACACAGCCGTGACAGAAGAACACTTCTTAGAACTAATTGACTTGGTGGAAGAGCACCGTCCCACGTCAGCATTAGCCAGAATTTATTCTGGCAACACAGCAGATGTGGGACCTGCTCTGGTGGTGTCCTCTGGACAAAGATTTTCCCAATCAAAAATCGATTTTGGTTGGGGAAAACCTATGTTTGGATCGTATCATTTTCCTTGGGGTGATGATACCGGATATGTGATGCCAATGTTGAGCCCTAAGAGGAATGGTGATTGGGTGGTGTACATGCACCTTCTCAAAGGGCATATAGATTTTATTAAGTCTAAGGCAGCTCATGTCTTTAAGCCTTTAACTTGGGATTACCTCAACACTCAACATTATTAG 1485 0.4694 MCGGSNGKGESSLFTVRVTNQEVIAAVLPVQEHWLPFSNLDLLLPPIDVSVFFCYNNTNRMSFGSMLRSLKNALGQALVSYYAFAGEVVHINSMGEPELLCNNRGVDFVEVEADLHLQNLNFYNPDESIQGKLVPIKKHGVLAIQFCYKNTSLSATYLKCGGIMVACTFDHRIADAYSANMFLVSWAQISRPIKPATLAPPCFRRSLLNPRRPLCIHPSLDDMYVPISISPPPFEPEPDNSDSLISRIYYITADQLCRMQSLASSSSSLDHIKNRTKLESFSAFLWKMVAMAAASSSSTTTLTGDCGKRFVVKMGVVVDGRKRLSNCDQSKEATMNSYFGNVLSVPFGGKPVEDLVEKPLSWAAEEVHKFLDTAVTEEHFLELIDLVEEHRPTSALARIYSGNTADVGPALVVSSGQRFSQSKIDFGWGKPMFGSYHFPWGDDTGYVMPMLSPKRNGDWVVYMHLLKGHIDFIKSKAAHVFKPLTWDYLNTQHY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272560g00003 494 Gene3D - 230 475 IPR023213 -
Stsc272560g00003 494 Pfam Transferase family 15 478 - -
Stsc272560g00003 494 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 28 449 - -
Stsc272560g00003 494 Gene3D - 15 221 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272560g00003 Stsc-Chr272560 16358 18350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272560g00003 25 474 Monolignol Biosynthesis Gene Families AT5G48930 26.374 2.74e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272560g00003 - - aip:107608222 672.159