Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272556g00002 ATGGTTTGCCAAGAACAAGAGGCATTAGTCAACAAAGTGCTTGACCTCTACCACAAGATCTCAACCTTAGCCACCCTGAAACCCTCCAAAGATGTTGACACCCTCTTCACCCAACTCGTTCACACATGCATCCCTCACACCCCATTCATAGACATCACTAAACTCCCCACAACCATCCAAGAAGCTAGATCTAACCTAATCCGCCTCTGCGGCGAAGCCGAATCGCTCTTGGAGACACATTATTCAACGCTTCTAGTGTCATCCTTCTCCGACGAGAATCCGCTTGGACATCTTCATGTCTTCCCCTACTACTCCAACTACCTCAAACTTAGTCACCTTGAATTTAACATTCTTAGTCAACACTGCGAGGCCGTCCCCACGAAGATTGCCTTCGTGGGATCTGGCCCACTTCCCTTAACCTCGATTGTCTTAGCTACCAACCATTTTCCCAACACAACATTTCATAACTATGACATCGACGCTTTGGCCAAGTCCATGGCCAAGGCATTGGTGTCCTCGGATCCTGACCTGTCTAGGCGCATGGTCTTTCATACCAGCAACATATTAGATGTGTCGCATGGTTTGGACGAGTTTAACGTTGTTTTCTTGGCTGCACTCGTAGGAATGGAAACTAAGGAGAAAAAAAAGGTGATCGACCACCTGGGTAAGTGCATGGCACCTGGAGCACTTCTGATGGTAAGAAGTGCTCATGGTGCCAGGGCATTTCTGTATCCAGTGGTCGATCCTTCTTCTGATCTGAATGGATTTGAGGTTTTGTCCGTGTTTCACCCCATCGATGAGGTTATCAATTCGGTTGTGATTGCACGAAAGTGTCCGATTATTGCGACAGCATCTTTGTCTGCTGAGCAAGGATTTGATGGTGTTGGATCAATGGCGCTGCATAACAAATGTCCTGAAGAGATTCAATCGGTGTTCATCAGTGGCAATAACCATTATAATAATGGGAACATGACTGAGGAATTGGTAGCTCAGGAGAAGCTTTAA 1005 0.4657 MVCQEQEALVNKVLDLYHKISTLATLKPSKDVDTLFTQLVHTCIPHTPFIDITKLPTTIQEARSNLIRLCGEAESLLETHYSTLLVSSFSDENPLGHLHVFPYYSNYLKLSHLEFNILSQHCEAVPTKIAFVGSGPLPLTSIVLATNHFPNTTFHNYDIDALAKSMAKALVSSDPDLSRRMVFHTSNILDVSHGLDEFNVVFLAALVGMETKEKKKVIDHLGKCMAPGALLMVRSAHGARAFLYPVVDPSSDLNGFEVLSVFHPIDEVINSVVIARKCPIIATASLSAEQGFDGVGSMALHNKCPEEIQSVFISGNNHYNNGNMTEELVAQEKL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272556g00002 334 Pfam Nicotianamine synthase protein 4 278 IPR004298 GO:0030410|GO:0030418
Stsc272556g00002 334 Gene3D Vaccinia Virus protein VP39 6 279 IPR029063 -
Stsc272556g00002 334 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 282 IPR004298 GO:0030410|GO:0030418
Stsc272556g00002 334 PANTHER NICOTIANAMINE SYNTHASE 3 4 288 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272556g00002 Stsc-Chr272556 14544 15785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272556g00002 1 332 Nicotianamine Synthase Gene Family AT5G04950 56.024 2.33e-128 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272556g00002 K05953 - gmx:100803630 401.364