Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272546g00002 ATGCATGCAATGATTTCAAGAAGTCTCCAGCATCAAGGGATGATGATGATGCAGATGTTCCCACCTCCTGGGACAGAGGATTTGGTCTCACAATCTGTGGAAATTGTTAATAACTACAACTCTACTGCTGTTGGTTCTTCTTCTTCCTCATCTGCTGGTGGTTCTTCTTCACACTCAAGCTCCATCCTCTTCAATCTCTCTGTTCTGAGGGACAAGCTCAATCAGGTTCAGACCCTTGTTGGTGTTATTCTCTCCCCAGATCAGAACCTACAACAGAACTCAACAACTTCCATAGCTGTTTCAAGCATGAACTGCACAATCCAAGAAATCATTGTCACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCACTTTCCCTCCTCCTCCTCCAGGTACCATTGCTACTACTACGCTTGCTCCTTGCGCCAACAACAACAACCAATTGGTTAAGAATAATAATAATGATGATGATGATGATCCAAGTGTTGAAATTAGTGATAACAAAGAAGGGGTTATTGTTTCATCACCAAAGAGCTTTGATATAATTGAATTGGATGCTGGGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGAAAAGGCTTCAAGCGCGATGCGAATCTGAGGATGCATATGAGAGCTCATGGTGATGAATACAAAACCAGTGCCGCATTGAGTAACCCTTTGAAGAAGCACAATAATAAACATGGCAACAATGGTGGTGGTGATTGTTTGGTGAAATATTATTCATGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACCCAAAGTTTCAGCCATTGAAGTCAATGATTTGTGCAAAGAATCACTACAAGAGAAGCCAATTGTCCAAAGATTGTTCTTGTGGCACCACTTTTTCAAGGAAAGACAAGCTTGTGGGTCATGTTGCTTTGTTTGTTGGCCACCGCGCCCTTCCTATTGCCTTCGACCAATACACTGCCTGA 981 0.4302 MHAMISRSLQHQGMMMMQMFPPPGTEDLVSQSVEIVNNYNSTAVGSSSSSSAGGSSSHSSSILFNLSVLRDKLNQVQTLVGVILSPDQNLQQNSTTSIAVSSMNCTIQEIIVTATSMMFTCQQIALTFPPPPPGTIATTTLAPCANNNNQLVKNNNNDDDDDPSVEISDNKEGVIVSSPKSFDIIELDAGDLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKKHNNKHGNNGGGDCLVKYYSCPQEGCRWNQKHPKFQPLKSMICAKNHYKRSQLSKDCSCGTTFSRKDKLVGHVALFVGHRALPIAFDQYTA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272546g00002 326 SUPERFAMILY beta-beta-alpha zinc fingers 196 224 IPR036236 -
Stsc272546g00002 326 Gene3D Classic Zinc Finger 181 247 - -
Stsc272546g00002 326 SMART c2h2final6 198 220 IPR013087 -
Stsc272546g00002 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Stsc272546g00002 326 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 291 316 IPR044300 GO:0010044|GO:0010447
Stsc272546g00002 326 FunFam Zinc finger protein 574 197 222 - -
Stsc272546g00002 326 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272546g00002 Stsc-Chr272546 19995 21112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272546g00002 59 314 C2H2 Transcription Factor Family AT5G22890 43.770 8.93e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272546g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272546g00002 - - var:108332918 290.041