Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272541g00005 ATGGAAGGCGAGAATAATCATCAAGAAAGATCAAAATTGAACAAAGCAAGGCAGATTGTGAAGCTAAGGGGAATGCTTCGTAGGTGGCACAGTTTCTCATCCTCACCATCCTCATCACCCTCAATCTCATCAACACCAAACATTTCTAGTAGCCCCAACTACAACATCATTGACAATTCTGATTTCCAAGAAAATATTGGCGTAAATGACGAAAATACCCCTAGGGCATGTAACTGTAGTAAGTTGGATGAAGTGGAGGGTCACAAATGTGAGAGCCCTGAGCCACCACCTGATGTTCCAAAAGGGTACTTGGCGGTTTATGTTGGACCTGAGCTCAGGAGATTCATCATTCCAACAAGCTACCTTACACATTCTCTCTTCAAGCTGTTGCTGGAGAAGGCTGAAGATGAGTTTGGGTTTAACCATAATGGTGCTCTCACTATTCCTTGTGAGACTGAGACCTTTAAGTACCTCCTCCGATGCATAGAGACCAACTATGATACCCATCAACATAGCTGCT 520 0.4365 MEGENNHQERSKLNKARQIVKLRGMLRRWHSFSSSPSSSPSISSTPNISSSPNYNIIDNSDFQENIGVNDENTPRACNCSKLDEVEGHKCESPEPPPDVPKGYLAVYVGPELRRFIIPTSYLTHSLFKLLLEKAEDEFGFNHNGALTIPCETETFKYLLRCIETNYDTHQHSC 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272541g00005 173 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 83 158 IPR003676 GO:0009733
Stsc272541g00005 173 MobiDBLite consensus disorder prediction 30 54 - -
Stsc272541g00005 173 Pfam Auxin responsive protein 90 162 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272541g00005 Stsc-Chr272541 29553 30072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272541g00005 4 169 Calmodulin-binding Proteins AT5G20810 51.163 2.60e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272541g00005 K14488 - tcc:18588225 157.532