Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272538g00003 ATGGGTTCAACCGGTGAAACACAGATAACACCAACCGTGGTGTCTGACGAAGAGGCGAACCTCTTCGCCATGCAGCTAGCAAGTGCCTCTGTTCTCCCAATGGTTCTCAAGTCAGCAATTGAGCTTGATGTGTTGGAGATCATTGCCAAAGCTGGGCCCGGTATTCACCTTTCTCCGGCCGACATTGCGGCGAAGCTTCCGACCACCAACCTCGATGCTCCGGTGGTGCTGGACCGCATGTTGAGGCTCTTGGCTTGCTACAACATCCTCAGCCACTCACTCCGAACCCGTCCAGATGGAAAGGTTGAGAGGCTCTATGGTCTTGCACCTGTTGCTAAGTTCTTGGTCAAGAATGAAGATGGTGTCTCTCTTTCTGCTCTTAACCTCATGAATCATGACAAGGTCCTCATGGAAAGCTGGTACTATTTGAAAGATACAGTGCTTGAAGGAGGGATCCCATTTAACAAGGCTTATGGAATGACAGCATTTGAATACCATGGAACAGATCCAAGGTTCAACAAGGGCATTAATTTTGATCTGCCCCATGTTATTGAAGATGCACCATCTTATCCAGGAGTGGAGCACGTTGGTGGCGACATGTTTGTCAGTGTTCCCAAAGCTGATGCTGTTTTTATGAAGTGGATTTGCCATGACTGGAGTGATGAGCACTGCATAAAGTTTTTGAAGAACTGCTATGATGCAGTCCCCGACAATGGTAAGGTGATAGTGGCCGAATGCATTCTTCCGGTGGCGCCGGATTCTAGCTTGGCCACAAAGGGCGTGGTCCACATCGATGTGATCATGTTGGCTCACAACCCAGGTGGGAAAGAGCGAACAGAGAAAGAGTTTGAGGCCCTTGCCAAGGCTGCTGGATTCCAAGGTTTCCGAGTTGTGTGCTGCGCTTTCAACACCTATATCATGGAATTTCTTAAGAAGCCTTAA 942 0.4883 MGSTGETQITPTVVSDEEANLFAMQLASASVLPMVLKSAIELDVLEIIAKAGPGIHLSPADIAAKLPTTNLDAPVVLDRMLRLLACYNILSHSLRTRPDGKVERLYGLAPVAKFLVKNEDGVSLSALNLMNHDKVLMESWYYLKDTVLEGGIPFNKAYGMTAFEYHGTDPRFNKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDEHCIKFLKNCYDAVPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKAAGFQGFRVVCCAFNTYIMEFLKKP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272538g00003 313 Pfam O-methyltransferase domain 174 293 IPR001077 GO:0008171
Stsc272538g00003 313 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 159 311 IPR016461 GO:0008168
Stsc272538g00003 313 Gene3D - 1 115 IPR036388 -
Stsc272538g00003 313 PANTHER O-METHYLTRANSFERASE 23 174 IPR016461 GO:0008168
Stsc272538g00003 313 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Stsc272538g00003 313 SUPERFAMILY "Winged helix" DNA-binding domain 16 119 IPR036390 -
Stsc272538g00003 313 Gene3D Vaccinia Virus protein VP39 116 175 IPR029063 -
Stsc272538g00003 313 Gene3D Vaccinia Virus protein VP39 176 311 IPR029063 -
Stsc272538g00003 313 PIRSF O-mtase 173 311 IPR016461 GO:0008168
Stsc272538g00003 313 PIRSF O-mtase 1 174 IPR016461 GO:0008168
Stsc272538g00003 313 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Stsc272538g00003 313 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 309 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272538g00003 Stsc-Chr272538 20202 23463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272538g00003 1 312 Monolignol Biosynthesis Gene Families AT5G54160 63.736 1.90e-168 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272538g00003 K13066 - gmx:100805999 561.222