Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272528g00003 ATGGAACAGAAGCACGTGTTGCTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTTGGGTTGGGATTGAGGTCAGGGAATAAATGGGTTGGAGGAGGGAACCATGACTCTGATGAGCTTCTTGAGGAACAGATTGTTCAGGAGCTCAAGAAGCTGATCATTGATGGAAAAAACAGCAAGGTCACTTTTGATGAGTTCCCTTATTACTTGAGTGAGAAAACTCGAGTTTTGTTGACGAGTGCTGGATATGTTCATTTAAAACAACAACACTTCTCCAAGCACATGAGGAACCTTTCACCGGTAAGCAGAGCTATTTTGCTCACCGGACCTGCAGAAATTTACCAGCAAATGCTTGTCAAAGCTTTAGCACATTTTTTTGAATCAAAGTTGCTGCTGCTAGATATTACTGAATTCTCTTTGAAGATGCAGAGTAAATATGGATGCTCTAGAAAAGAATCATGTTTGAAAAGGTCCCTATCCGAGGTAACTATGGAGCGAATGTCTGGTTTATTTAGTTCCTTTTCGCTCAACCCGTCAGCAAGTGAAGCTAGAGCTAGTAATGATGATATTCATGACGTTTCAAAAGGTACTCATCGTCGACAACGTAGTAGTGGACTCGAAAATAGACAAAGTAGTGGTGGTGGAAATGAAAATTTGAACAATGCTCCAAACCTCCGAAGGACTTCCTCTTCTTCATGTGATATAAGTAGTACCTCCCTGTTTGGTCCGAATGATTCAGGTTCTTCGAAGCGAACAAACTATGTTTATTTTGACGAAAAGCTTTTTGTGCTGTCACTTTACAAGGTGTTGGTTTCTGTCTCAGAAACTAGTGCCATTGTTCTGTACATTAGGGATGTTGATAAGCTATTCCTTAGATTGCCGAGAATGTATAGTATGCTGCAGAGGCTAATGAAGAAACTGACAGGGTCAGTGTTGATACTTGGTTCCCAAGTGGTGGATTCAGATTACTGTAAAGAAGTTGATGAACGGCTGGGTATATTATTTCCTTACAACATTGAGATCAAACCCCCTCAAGATGAGACTCAATCCGGCAACTGGAAAGCCCAACTAGAAGAGGACATGAAAGTGTTTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGATCCAGAATACCGAAACGGAAAGCTAGTTCTATCGGCTAAGAGTTTGTGTCAGGCACTGAATCTGTTCCAGGAAGGCAAAGTCAGTGGAAAGGATAACACAAAGCCTAATGAGACTAAGGATGACTGTGGAGAAGATGCTAGTGGTGCAAAGAATGATGCCCAAGCACCTGAAAAAAGCGAGGCAGAGAAATCCAACCCAGTAGTAACAAAGAAGGATGGCGAGAATAGTACTCCTTCAAAAGCAGCTGAAGCTCCTCCGGACAATGAGTTCGAGAAGCGTATAAGACCAGAGGTGATACCTGCAAATGAGATAGGGGTTACATTCGGAGACATTGGTGCATTGGATGACATTAAAGAATCACTTCAAGAGGCGGTGATGCTTCCCCTTAGAAGACCAGACCTTTTCAAAGGTGGCCTTCTAAAGCCTTGCAGAGGGATATTGCTTTTCGGGCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCGATTGCAAACGAAGCAGGAGCAAGTTTCATTAATGTTTCAATGTCCACCATAACTTCAAAGTGGTTTGGAGAAGACGAGAAGAATGTTCGAGCTTTGTTCACGCTGGCAGCAAAGGTTGCTCCAACTATTGTTTTTGTTGATGAGGTTGATAGCATGCTTGGGCAGCGTAGTAGAGCTGGAGAGCACGAGGCAATGAGGAAGATTAAAAATGAATTCATGACTCATTGGGATGGACTATTGACAAAGCCTGGTGAGCAGATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGATCTCGATGAGGCTATTATAAGACGCTTTGAGCGCAGGATTATGGTTGGTCTTCCATCTGCTGAAAACCGGGAAGGCATCTTGAAAACTCTTCTGTCTAAGGAAAAACATGAAAATATAGACTTCAAAGAGCTTGCAGCCATGACAGAAGGATATAGCGGGAGTGATCTTAAGAATTTGTGCATGACGGCGGCTTATCGACCTGTTAGGGAGCTACTAAAGCAGGAGACAATGAAAGAAGTGGAAAGGAAGAAGAAAGCGGCACAAGGACAAATCTCAGAGGATACGTCCAATGTTAATGAGGATAAAAATGGCCAATCAATTATCCTGAGGCCTTTGACCATGCAAGACATGAGAAAGGCAAAGAATCAGGTAGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAGCGAGCTGAAGCAGTGGAACGATTCGTATGGAGAAGGAGGATCAAGAAAGAAAGAGCAACTCACTTATTTCCTATAG 2391 0.4299 MEQKHVLLSALSVGVGLGVGLGLRSGNKWVGGGNHDSDELLEEQIVQELKKLIIDGKNSKVTFDEFPYYLSEKTRVLLTSAGYVHLKQQHFSKHMRNLSPVSRAILLTGPAEIYQQMLVKALAHFFESKLLLLDITEFSLKMQSKYGCSRKESCLKRSLSEVTMERMSGLFSSFSLNPSASEARASNDDIHDVSKGTHRRQRSSGLENRQSSGGGNENLNNAPNLRRTSSSSCDISSTSLFGPNDSGSSKRTNYVYFDEKLFVLSLYKVLVSVSETSAIVLYIRDVDKLFLRLPRMYSMLQRLMKKLTGSVLILGSQVVDSDYCKEVDERLGILFPYNIEIKPPQDETQSGNWKAQLEEDMKVFQFQDNRNHIAEDPEYRNGKLVLSAKSLCQALNLFQEGKVSGKDNTKPNETKDDCGEDASGAKNDAQAPEKSEAEKSNPVVTKKDGENSTPSKAAEAPPDNEFEKRIRPEVIPANEIGVTFGDIGALDDIKESLQEAVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIVFVDEVDSMLGQRSRAGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREGILKTLLSKEKHENIDFKELAAMTEGYSGSDLKNLCMTAAYRPVRELLKQETMKEVERKKKAAQGQISEDTSNVNEDKNGQSIILRPLTMQDMRKAKNQVAASFAAEGSIMSELKQWNDSYGEGGSRKKEQLTYFL 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272528g00003 796 Pfam AAA+ lid domain 674 717 IPR041569 -
Stsc272528g00003 796 Coils Coil 713 733 - -
Stsc272528g00003 796 MobiDBLite consensus disorder prediction 431 445 - -
Stsc272528g00003 796 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 481 655 - -
Stsc272528g00003 796 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 795 - -
Stsc272528g00003 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 724 IPR027417 -
Stsc272528g00003 796 MobiDBLite consensus disorder prediction 206 233 - -
Stsc272528g00003 796 MobiDBLite consensus disorder prediction 402 469 - -
Stsc272528g00003 796 MobiDBLite consensus disorder prediction 180 233 - -
Stsc272528g00003 796 SMART AAA_5 518 655 IPR003593 GO:0016887
Stsc272528g00003 796 MobiDBLite consensus disorder prediction 406 423 - -
Stsc272528g00003 796 Gene3D - 654 727 - -
Stsc272528g00003 796 MobiDBLite consensus disorder prediction 185 205 - -
Stsc272528g00003 796 ProSitePatterns AAA-protein family signature. 625 644 IPR003960 GO:0005524|GO:0016887
Stsc272528g00003 796 Pfam ATPase family associated with various cellular activities (AAA) 522 652 IPR003959 GO:0005524|GO:0016887
Stsc272528g00003 796 Gene3D - 481 653 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272528g00003 Stsc-Chr272528 19923 24333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272528g00003 482 727 Calmodulin-binding Proteins AT3G56690 40.000 3.95e-45 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272528g00003 - - gmx:100804099 1072.38