Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272525g00001 ACTGGAAAATCATCAGAGAAGACTGATGTGTTTGGGTATGGTATAACACTTCTCGAATTAGTCACCGGTCAACGCGCCGTTGACTTATTTCGGCTTCAAGAGGAGGAGGAGGATGTTCTTCTGCTTGATCATATAAAGAAGCTGTTGAAGGAAGACAGGTTGAAGGACATAGTAGATAGAAACCTAGAGACATATGATGAAAAGGAAGTAGAGAGAATAATTCATGTTGCATTGTTTTGCACAAGAAACTACCCAGAGGAGCGTCCAACAATGTCAGAGATAGTGAAAATGCTTCAAGGGGTTGGTTTGCAAGAGAGATGGAATGAATTGGAGCAACGTAGTAATGAAGAAGAGGTTAGTAATCAACTCATGTCTCACCAGTTTGTTTGGACTGCTGAATATTCAACCCTTGATCAAGAAGCTATAAGGCTTTCAGAAGCAAGATAA 447 0.4049 TGKSSEKTDVFGYGITLLELVTGQRAVDLFRLQEEEEDVLLLDHIKKLLKEDRLKDIVDRNLETYDEKEVERIIHVALFCTRNYPEERPTMSEIVKMLQGVGLQERWNELEQRSNEEEVSNQLMSHQFVWTAEYSTLDQEAIRLSEAR 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272525g00001 148 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 108 - -
Stsc272525g00001 148 SUPERFAMILY Protein kinase-like (PK-like) 3 106 IPR011009 -
Stsc272525g00001 148 Gene3D Transferase(Phosphotransferase) domain 1 1 120 - -
Stsc272525g00001 148 Pfam Protein tyrosine and serine/threonine kinase 3 98 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272525g00001 Stsc-Chr272525 1 1396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272525g00001 1 142 Receptor kinase-like Gene Family AT5G65240 60.140 7.97e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc272525g00001 PK_Tyr_Ser-Thr 4.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272525g00001 - - cpap:110816475 202.601