Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272519g00008 ATGGCTTCTTCAAACAGACACTGGCCAAGCATGTTTAAGTCAAAGCCCTCATGGCAGCATGATATCACTATAACTACTACTGCATCTTCTTCTTCTTCTTCAAGTAGTAGAGCAACCACACCTTACTCTTGTGACGACAGAAGCCCTGAGCCCAAGCCCAGGTGGAACCCAAAGCCCGAGCAAATTCGGATCCTGGAATCCATATTCAACTCTGGGATGGTGAACCCTCCCAGAGATGAAATCAGGAAGATAAGGGCTCAGTTGCAAGAGTATGGCCAAGTTGGTGACGCCAATGTCTTCTACTGGTTTCAGAATCGCAAATCTAGAACCAAGCATAAGCTCCGCCATCTCCATAACAAGAACCCTCCACCACCACCTCCTCCTGCTCCTCCTGCTCCGTCATCTACCACGACCTCATCATCTTCCTCTGACAAGTCATCACCTCCGCCACCCACCACTACCTATTTCTACACCGCCACTATTCCACCACCACCACCACCTGCTGAGACTTTCATCTTCCCTCTGCAACATCAAGGTAACAACAACAGTGCTATCATAACTTCATCATCATCGCCACCGCAAGGGCTTTTCTTCTCTGAGCTCTCCAATGTGGTGCAAGCTCATCATCAGCCTCAACCGCTGCCACCGCCACATCATCAACTGATGATGCATAACGTGGTTGGTCCTTGCACTAGTCTCTTGCTTAGTGAGATCATGACTAGCACCAATAACATTGCTTCAAAGAAAGATCATCATCATCAAGAACTTGCCACCAGTAATAAGTCCATGAAATTAATGCACCATGGCCACTACCACACACCAAAGCAGCTTAGTTTCTGCGTCACTCCACCTACTACTACCACTACTGCCACCACTCTCGTCCCTCCGATCACCACCACCACCGTTAACATCCCACAAACACCATCGCTCCTGACTCAAGGCGGAGTAGGCCACCAAGGTATTGGTGAAGGAAGCGAGAAAATAACGGTGTTCATAAATGATGTGGCGTTTGAGGTGGCAGCGGGGCCATTCAATGTGCGGGAGGCGTTTGGGGAAGACGCAGTCCTCATCCACGCCATATCTGGTCAACCTCTTCTCACTAATCAATGGGGTCTTACCCTCCACCCTCTCCACCATGGCGCTTCTTATTATCTGATTTAG 1161 0.4927 MASSNRHWPSMFKSKPSWQHDITITTTASSSSSSSSRATTPYSCDDRSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRTKHKLRHLHNKNPPPPPPPAPPAPSSTTTSSSSSDKSSPPPPTTTYFYTATIPPPPPPAETFIFPLQHQGNNNSAIITSSSSPPQGLFFSELSNVVQAHHQPQPLPPPHHQLMMHNVVGPCTSLLLSEIMTSTNNIASKKDHHHQELATSNKSMKLMHHGHYHTPKQLSFCVTPPTTTTTATTLVPPITTTTVNIPQTPSLLTQGGVGHQGIGEGSEKITVFINDVAFEVAAGPFNVREAFGEDAVLIHAISGQPLLTNQWGLTLHPLHHGASYYLI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272519g00008 386 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 386 IPR044557 GO:0003700|GO:0050793
Stsc272519g00008 386 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Stsc272519g00008 386 FunFam WUSCHEL-related homeobox 11 52 119 - -
Stsc272519g00008 386 MobiDBLite consensus disorder prediction 19 43 - -
Stsc272519g00008 386 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
Stsc272519g00008 386 MobiDBLite consensus disorder prediction 120 134 - -
Stsc272519g00008 386 MobiDBLite consensus disorder prediction 19 60 - -
Stsc272519g00008 386 SUPERFAMILY Homeodomain-like 48 115 IPR009057 -
Stsc272519g00008 386 Gene3D - 52 117 - -
Stsc272519g00008 386 MobiDBLite consensus disorder prediction 135 154 - -
Stsc272519g00008 386 MobiDBLite consensus disorder prediction 111 161 - -
Stsc272519g00008 386 CDD homeodomain 51 113 IPR001356 GO:0003677
Stsc272519g00008 386 SMART HOX_1 50 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272519g00008 Stsc-Chr272519 25547 26948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272519g00008 1 386 Wox Gene Family AT2G33880 43.373 9.67e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc272519g00008 Homeodomain 2e-14 CL0123