Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272519g00006 ATGGAACAACACCACAAGTTGTTTCTTCTGCTGATGCTTCATGTTCAAGTTCTACTTGTAGCAGCACAAACAAACAGCCAAGACTATAATGGCTTAGCAGCTTTTACAGGATTCTGGACTAACAGACCACCAAATTGGGTGGGAACAGATCCTTGTGGCAGTAATTGGGAAGGAATTCGTTGCTCCAATTCAAGGATTACAGAATTGAAACTATTAGGCATGAATTTGGAGGGTCAAATATCTTCAGCAATCCAGCAATTAACTGAGCTAGACACATTGGATCTTTCTTACAACCCTGGCTTGACAGGAACAATTCCACAAGAAATTGGGAATCTGAAGAAGCTAAAATCCCTTGCATTAGTCGGTTGCGGTCTCTCTGGTCCTATACCAGACTCTATTGGAGCTTTAGAGCAACTAACCTTTCTAGCACTTAATATGAATCGGTTCAATGGAAGCATTCCGCGCTCCATTGGCAATCTGTCTAGTCTCAATTGGCTTGATCTTTCCGATAATCTACTTGGAGGACAAATTCCTGTTTCTGATAACAAAGGAAGACCAGGACTAGACCTGCTCATTCAGGCCCAACACTTTCATATGGGGAACAATAAGCTCACCGGTCCATTACCGGAAAGGCTATTCAATTCCAGTATGAAACTAATGCATGTGCTTTTCGACAACAATCAACTGCAGGGTAGTATTCCTAGCTCCCTTGGTCAAGTGAGCACATTGGAGGTGGTGCGCTTAGATAAGAACGGATTTAGCGGAGCAGTGCCTTCAACTTTGAAGAATCTTGGACAACTTAGTGAGCTGTATTTATCCAATAATTATAATCTGAATGGCTCTCTACCAGACCTTACAGGATTGAATAGCCTCACCTATGTGGATATGAGCAACAATTCTTTCAACAGTTCTGATATTCCTTCATGGGTTTCAAGTTTGCAATCTCTGACAACTGTGCTACTAGGGAACAACCAGTTGAGTGGCACATTGAATCTTACAGGTGGATACAGTAGCAGTCTGCAGCTCATTGATTTGCAGAATAATGGAATAACAGATTACAAGCCAGGAAGCAAAAAGATCAATTTCCAAGTGGTGTTGTATGGTAATCCTATTTGTCATGAATCTCAATCTCAACAACTGAGTTACTGCCAACTGCCACAACAAACTCCTTCATACACAACACCATTTAACAATTGCTCCGCTCCATCCTGTGCTTCCGGTCAGGTTTCGAGTCCAAATTGTAAATGTGCATATCCCTATGATGGAACACTCTACTCCAGAGCTCTTAGTATCACAATCCTTAATGATACTGATTACAAGGAGCTTGAGAACTCTTTGTTGAACAGTTTTCAGTCCCAAAAGCTTCCTGTGGATTCAGTTTCTCTCAGTAATCCTACAAGGAATGCATCAAACAATAATTTTCAGTTGACTCTGAATGTCTTCCCATCTCAAACGGACGATCGTTTTAACAGAACCGGAGTTTCAAGTGTTGCTTTTGTGCTAAGTAACCAAATTTACAAGCCCCCGGAATTTTTCTCCCCTTACTTCTTCAATGGTCAAAACTATGAATACTATGGAGGAGAACCTAAATCAAAGTCAAACCATACTGGGGTTATAGTTGGTTCAGTAGTTGCTGTTTTGGTGTTCCTTGGATTAGCCTTCGCCGCAGGGATGTATGCCCTTCGCCAGAAAAGAAGAGCAGAAAGATCTGAACTCAATCCTTTTGCAAATTGGGAACAAAATCCAAACAGTGGTGCTGCTCCTCAGTTGAAAGGAGCGCGATGGTTTTCTTTCGAAGAGCTGAGGAAGTACACCAACAACTTCTCAGAAAGCAATACTATTGGAAGTGGGGGCTATGGAAAGGTGTACCGAGGTGTTCTTCCTAGTGGGGAAGTGGTCGCCATCAAGCGAGCTGGACAAGAATCCATGCAAGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTTTCAAGGGTCCACCATAAGAATCTTGTTAGTCTTGTTGGTTTCTGCTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCAAATGGTACCTTAATGGATAGTCTTACAGGAAAGTCTGGGATATCGATGGATTGGATCCGGAGGCTAAAAGTCACATTGGGCGCGGCGAGGGGTCTGGCATATCTTCATGAACTTGCTAACCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATAGCCACCTTAATGCAAAAGTTGCTGATTTTGGTCTCTCAAAACTTCTTGTAGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGAACAATGGGATACTTGGATCCTGAATATTACATGAGCCAGCAATTGACTGAAAAGAGTGATGTATATAGCTTTGGAGTGGTTATGCTTGAGCTAGTAACAGCAAAAAGGCCAATAGAGCAAGGGAAGTACATTGTGAGAGAGGTAATGAGGGTAATGGATACATCAAAAGACTTATACAATCTTCACTCTATTGTTGATCCAACCATAATCCAAAGCACAAGTCCAAAGGGGTTAGAGAAGTTTGTTGAAGTGGCAATGAGGTGTGTGAAAGAATATGCATCTGAGAGGCCTTCAATGGCTGAGGTTGTGAAAGAGATTGAGAACATAATCCAGCTTGCTGGTTTGAACCCCAATGCAGAATCAGCTTCCACAACAGAAAGTTATGAGGTGCCAAAGGGGGAAAATCTCAAACTCGCTTATGGCAATGAAGATTTTAGCTATACTGGAACCTTCCCAACAGCAAAGATAGAACCTCAATGA 2793 0.4196 MEQHHKLFLLLMLHVQVLLVAAQTNSQDYNGLAAFTGFWTNRPPNWVGTDPCGSNWEGIRCSNSRITELKLLGMNLEGQISSAIQQLTELDTLDLSYNPGLTGTIPQEIGNLKKLKSLALVGCGLSGPIPDSIGALEQLTFLALNMNRFNGSIPRSIGNLSSLNWLDLSDNLLGGQIPVSDNKGRPGLDLLIQAQHFHMGNNKLTGPLPERLFNSSMKLMHVLFDNNQLQGSIPSSLGQVSTLEVVRLDKNGFSGAVPSTLKNLGQLSELYLSNNYNLNGSLPDLTGLNSLTYVDMSNNSFNSSDIPSWVSSLQSLTTVLLGNNQLSGTLNLTGGYSSSLQLIDLQNNGITDYKPGSKKINFQVVLYGNPICHESQSQQLSYCQLPQQTPSYTTPFNNCSAPSCASGQVSSPNCKCAYPYDGTLYSRALSITILNDTDYKELENSLLNSFQSQKLPVDSVSLSNPTRNASNNNFQLTLNVFPSQTDDRFNRTGVSSVAFVLSNQIYKPPEFFSPYFFNGQNYEYYGGEPKSKSNHTGVIVGSVVAVLVFLGLAFAAGMYALRQKRRAERSELNPFANWEQNPNSGAAPQLKGARWFSFEELRKYTNNFSESNTIGSGGYGKVYRGVLPSGEVVAIKRAGQESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLTGKSGISMDWIRRLKVTLGAARGLAYLHELANPPIIHRDIKSSNILLDSHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVVMLELVTAKRPIEQGKYIVREVMRVMDTSKDLYNLHSIVDPTIIQSTSPKGLEKFVEVAMRCVKEYASERPSMAEVVKEIENIIQLAGLNPNAESASTTESYEVPKGENLKLAYGNEDFSYTGTFPTAKIEPQ 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272519g00006 930 Gene3D Transferase(Phosphotransferase) domain 1 684 898 - -
Stsc272519g00006 930 Pfam Protein kinase domain 609 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272519g00006 930 ProSiteProfiles Protein kinase domain profile. 608 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272519g00006 930 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 684 893 - -
Stsc272519g00006 930 FunFam Leucine-rich repeat family protein 27 182 - -
Stsc272519g00006 930 FunFam Leucine-rich repeat protein kinase family protein 184 284 - -
Stsc272519g00006 930 Gene3D Phosphorylase Kinase; domain 1 579 683 - -
Stsc272519g00006 930 Gene3D Ribonuclease Inhibitor 188 401 IPR032675 -
Stsc272519g00006 930 SMART serkin_6 608 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272519g00006 930 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Stsc272519g00006 930 SUPERFAMILY Protein kinase-like (PK-like) 588 877 IPR011009 -
Stsc272519g00006 930 SUPERFAMILY L domain-like 41 382 - -
Stsc272519g00006 930 PANTHER RECEPTOR-LIKE PROTEIN 55 42 880 - -
Stsc272519g00006 930 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Stsc272519g00006 930 CDD STKc_IRAK 614 880 - -
Stsc272519g00006 930 FunFam Leucine-rich repeat protein kinase family protein 575 683 - -
Stsc272519g00006 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272519g00006 Stsc-Chr272519 14764 19541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272519g00006 8 930 Receptor kinase-like Gene Family AT5G49760 53.095 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc272519g00006 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272519g00006 - - gmx:100786172 1317.37