Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272518g00003 ATGTCCAGAGAAAGGGAGAGATTTGAGGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATAATAATGTTTCAAGTAGTCAAATGGGAAGAAGACATATGTTAGGGCCACCAGGAACCCTAAACACAATAACACCATGTGCAGCATGCAAGCTATTGCGACGAAGATGCGCCCAAGAATGCCCTTTCTCTCCCTATTTCTCTCCTCATGAGCCTCAAAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAGGTGCCGGAGTGTCAAAGAGCGGATGCAGCGAATAGTCTTGTTTACGAGGCAAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCAGCATTGCAGCATCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGATCAGAAATTCTTAAATACAAACTCAGAGAAGCTAACAACAATATCATTATTCCCTCATCCTCCCACCTCCATCATCTTCCTATGCTCCCTTCATCCGGGGCTGTTTCCATCGCTGCTCCGCCACCACCGCCGCCTCCTCCTCCACCGCCTCCACCGCCGCCTCCTAATCCTAATTCTCTTCCTCCCGCCATTTCTTCCTCTTCTTCTTCCATGTACATCCAACAACAACAGAGGGCTCCCACCAACTATAGCAGAATTCCAAGTGACAATATTTCTTATTTTGGTTAA 714 0.4636 MSRERERFEEIGKKIKREGDNNVSSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQAELNAVRSEILKYKLREANNNIIIPSSSHLHHLPMLPSSGAVSIAAPPPPPPPPPPPPPPPPNPNSLPPAISSSSSSMYIQQQQRAPTNYSRIPSDNISYFG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272518g00003 237 MobiDBLite consensus disorder prediction 178 203 - -
Stsc272518g00003 237 PRINTS Wilm's tumour protein signature 127 143 - -
Stsc272518g00003 237 PRINTS Wilm's tumour protein signature 180 194 - -
Stsc272518g00003 237 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Stsc272518g00003 237 MobiDBLite consensus disorder prediction 1 36 - -
Stsc272518g00003 237 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272518g00003 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 221 - -
Stsc272518g00003 237 Coils Coil 124 151 - -
Stsc272518g00003 237 MobiDBLite consensus disorder prediction 204 237 - -
Stsc272518g00003 237 MobiDBLite consensus disorder prediction 173 237 - -
Stsc272518g00003 237 Pfam Lateral organ boundaries (LOB) domain 45 142 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272518g00003 Stsc-Chr272518 12791 14012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272518g00003 30 179 AS2 family AT2G40470 82.667 1.77e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc272518g00003 LOB 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272518g00003 - - ccaj:109797870 311.612