Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272513g00001 ATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGAAAGCCAGTCCAACCCCGTTGCCCGACCGTTTTCTCAGCCGCGGCAACCTCCGTCCTCTGCGGTTACAGCGTTGGCTTCAGCCATAGCGAGGTTCCGAACTAACAGCGACAGGGACTCCGAAAGCAGTGATTCGGGTCGGGTAGGGTACCACCCGCAGCCGCCACAACATCAAGAGCTTGTTGCTCAGTACAAGGCCGCGCTAGCTGAGCTCACCTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCAGGAGAGAACCTTTCTGCCGCAAAGGCGATTGCTGGCACCGTTTGTACTAACATTGTAGAGGTTCCAAGTGAACAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATCGGGCGGGATTATATAAAATACTTTGCCACCAGGCTACCTGAGGTATTCATCAAGACATACAAGCAGGTTGATCCACCAGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCACAGACCCTTCAGATGATTGAGAAGGAACTTGGCTTCACATCTGCAGCCAATGGTTCAGTTTCTGCATCTGCTACGCTCAGAAGTGAATCACAGCCTCAACGCCCAGCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCACGGTTAAAGGAGTAGCTAATGATACGACTAGAGCTATTTTGAACACAAATGAGGATCCAGAGAGGCCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTAGATCCTAGGATTAACATGCATCGTATTCGAAGAGATGCATATAATGATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATCCGGGCCTTGAAAATAATTCAAGTATTTCAAGTATCGGTTTTACAAATCATGAAGCACCAAAGCCGATGAACTTGGATGCACATCATCAGCCAACACAAAACATAACTAGCATACGGAGCAGTGTATTGGCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGACTGGCGATGGTGCAGCCAGCATGGCCAACAACTTGAATACAGAACCCTGGATGGGTGGCGATGATGAGAACGTTGATGGAGAAGATCAACCCCAAATTTTGCACCATTTTGGGGAAAAGGTTGATAGAGAAATATCTACTGTTAGGAAACAATCATTTGCATTTGGGAGGCATTCATCATTGCCATGGAAATTGCAGGAGCAGAGACCGAATGAAAAGGTGAATATGAAGCCAGGTCACTCTGAAGGATATTTGTCCTCTTTAGGTTGCTTACCAGCCAATACAAGTTCTTTGGTTGCCAGGGTGGCAAATCGGTCTTCCATGCCAAATGCAACCATAGGTATGGCTGAAGTTATGGGACAAAAGAATTTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGAAGCAGTCTGCATCACTGCCCATAACAAAGCACCACCCTCATCCAACACAAAATTTGTTGGAGCAGGCTTCTAAAACATCGCAATTTCCAGGAGGTCTGCAGAGCCAATATATAAGAGATCAACCACCTGCCCTTCCTTCCAATGCTCAAGTTGGTAGTTTGCTTAGAGCTAGAGAAAAGGATTTGCATGGTCCTTTATCTTCAGTGACTTCTTTTCCGCCAAGGCATCAACAACAGCAGCTGGTCTCATCCCAGACTGAAGTTACTGCGAAAACTAAGAAGCCTCCCCACTCTAAACTCTCTTTGGCCAGTGAAAGTTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGAGTCCTCAACAAATCAATTGCAAGTAGTTTTCCTGTTACAAGTAGTAATCTAGTTACAAAGAATCTTCCATCCAACATAGGGGTTCGCCCAGTTCTATCAGGTAGACCTTCTCCTGCCACATTAATTTCTTCGGTATCTACAGTCGCATCATCTAAATTAGTTCCTCCAAATGAAGATTCTTCTATTATGGATAACATATCTCAAGCAAATGGTGGACAGCAACCAAAGGTTTCTACAAAGTTGCCAACTTCCTCTAATGCGAGCACTGTGTCAGCTCCAACCTCTACTGCCTCAAAAAATAATTCCTTAAATCCAATTGCAAACCTTTTAAGCTCATTGGTTGCAAAAGGTTTGATATCTGCAGATTCAGAGTCACCAACTAAGATACCAAGTGAGACCCTGGTTCAATTGGAAGGATGTAATGATAGCATTACTGCCAACAGCTCATTGTCAGTTCCTGGTTCCACAGCTCTCCCAGTAACATCCTCTAAAGTTGAGGAAGATGATGCAAAGGCTTCCCTTATCTCAAGTCAATCAACCAACACCAAAATAAGGGATATCATTGGTTTTTATTTTAAGCCTGATATAGTCCGAGAGATGCATCCCGCCGTAATTAAGGGATTATTGGATGATAATCAACATCATTGCAAACTTTGTGGTATTAAGCTTAAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTCCACACGAGAAAGAGAGCAAGATGGTCTCATTAGAGCATCCAGAAAATGGTATGGAAATTGGTTTCCGCCCGAGCCTAGTGATTCCGTAGATGAATATTATGAGGAAACAGAGAGGAGTCCATCGGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGCGTATTGTGTGGCGAGCTGTTTGAAGATGTGTACTGTCAAGAGAGGGATGAATGGATGTTCAAAGGTGCTGTCTACATAAACAACTTAGATAGCAACCGTGAAATGGAAAGTAGAAATGTGGGGCCGATTGTTCATGCTAAATGTTTGTCTCAGAACTCAGTATACGATGTCAGCAAGATGGAACAGGATTAA 2973 0.4443 MESTRRSFDRSREPGAKKPRLIDELESQSNPVARPFSQPRQPPSSAVTALASAIARFRTNSDRDSESSDSGRVGYHPQPPQHQELVAQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNIVEVPSEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFIKTYKQVDPPVHSSMRHLFGTWKGVFPPQTLQMIEKELGFTSAANGSVSASATLRSESQPQRPAHSIHVNPKYLERQRLQQSSTVKGVANDTTRAILNTNEDPERPSRVLGASRPWLDPRINMHRIRRDAYNDSVPEKSLAESYPGLENNSSISSIGFTNHEAPKPMNLDAHHQPTQNITSIRSSVLAGSWKNSEEEEFMWDEMNSGMTGDGAASMANNLNTEPWMGGDDENVDGEDQPQILHHFGEKVDREISTVRKQSFAFGRHSSLPWKLQEQRPNEKVNMKPGHSEGYLSSLGCLPANTSSLVARVANRSSMPNATIGMAEVMGQKNFDSMGTKPTSVQSPLQKQSASLPITKHHPHPTQNLLEQASKTSQFPGGLQSQYIRDQPPALPSNAQVGSLLRAREKDLHGPLSSVTSFPPRHQQQQLVSSQTEVTAKTKKPPHSKLSLASESSEQSKSSLSAATVQTRVLNKSIASSFPVTSSNLVTKNLPSNIGVRPVLSGRPSPATLISSVSTVASSKLVPPNEDSSIMDNISQANGGQQPKVSTKLPTSSNASTVSAPTSTASKNNSLNPIANLLSSLVAKGLISADSESPTKIPSETLVQLEGCNDSITANSSLSVPGSTALPVTSSKVEEDDAKASLISSQSTNTKIRDIIGFYFKPDIVREMHPAVIKGLLDDNQHHCKLCGIKLKQEEQFNKHLEWHSTREREQDGLIRASRKWYGNWFPPEPSDSVDEYYEETERSPSDAMVPADESQCLCVLCGELFEDVYCQERDEWMFKGAVYINNLDSNREMESRNVGPIVHAKCLSQNSVYDVSKMEQD 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 584 605 - -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 576 629 - -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 1 79 - -
Stsc272513g00001 990 Gene3D - 77 206 IPR008942 -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 498 562 - -
Stsc272513g00001 990 ProSiteProfiles CID domain profile. 81 209 IPR006569 -
Stsc272513g00001 990 CDD CID_Pcf11 86 198 IPR047415 -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 686 734 - -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 1 24 - -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 500 562 - -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 30 48 - -
Stsc272513g00001 990 ProSitePatterns Zinc finger C2H2 type domain signature. 852 872 IPR013087 -
Stsc272513g00001 990 FunFam polyadenylation and cleavage factor homolog 4 78 206 - -
Stsc272513g00001 990 SMART 558neu5 84 206 IPR006569 -
Stsc272513g00001 990 MobiDBLite consensus disorder prediction 613 629 - -
Stsc272513g00001 990 SUPERFAMILY ENTH/VHS domain 81 204 IPR008942 -
Stsc272513g00001 990 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 981 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc272513g00001 990 Pfam CID domain 90 200 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272513g00001 Stsc-Chr272513 722 6648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272513g00001 824 989 C2H2 Transcription Factor Family AT4G04885 33.333 3.79e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272513g00001 K14400 - gmx:100811629 1011.52