Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272510g00005 ATGGCAACGTTATGCCAGCTAGCCTCCGTTTCCTGCCACATCAGCCTCTTCCGCACCATACCTTATGAGATTGGTGACAAATTAAGAAACCTTCAGATACTGCACTTGCACAACAACACCCTTAAAGGATCAATTCCTCCAAACATCTTCAACCTCTCAGGGTTACAGAGGAACAATCTTAGTGGAGTTATACCTGATTCAATTGGCAACTTCAGAAGCCTCCAGCTTCTGTATATCTCAGATAACAGCTTCACCAATGATCCTTCTTCCCAAGAGCTTGGTTTCCTCACTTCACTCACAAAGTGCAGGAACTTGCAGAAGCTTCTTTTGTCATTTAATCCTCTTCATGGATCACTTCCAAACTCTATTGGAAACCTTTCAGAAACTCTAGAATTTTTTGATGCAGAGAGTTGTAACATCAAGGGTCAGATTCCTTCACAGGTTGGAAATTTGAAGAACTTGTATGGTTTGAATCTCAATGATAACCAGCTTGTTGGAGAGATTCCAACAACAATTGGGGATATGAAACTTCAAAGATTAGACCTATCCAGCAATCAATTGAGAGGCTATATCCCGTCACAGATTTGTCAGATGAAAATTTTGAACCAGTTGCTTCTTAGCAATAACCAAATCTTTGGGCCCATTCCAAGATGTGTGGATCAACTTTCTTCTCTAAGCATACTTCACTTAGATTCCAATAACCTAAACTCCACAATACCTTCTACACTTTGGAGTCTCAGTGATATATTGGAGGTGAATTTATCCTCAAACAGTTTTGAAGGTTCTTTGCCAATTGACATAAGCAGCATGAATGCTGTGATAAATTTGGATGTTTCACATAATAAGCTTTCAGGAAAAATTCCAACTGGAATTGGTAGCTTGCAGAGGATATTGAATCTCTCATTAGCTTATAATATGATACAAGGTCCTATTCCTGATTCAATTGGGAATATGTTAAGCTTGGAATTTCTTGATTTTTCTCATAATCTTTTATCAGGAACTATTCCAAAGTCTTTAGAGAATCTTGTTTATCTCAAGTTCATAAACCTGTCATATAATAGGCTATATGGTGAGATTCCATCTGGTGGCAACTTTGCAAACTTCAGATCTCAATCATTCATGATGAATGATGATCTCTGTGGAAAACCAAACTTTGGAGTGCCACCATGTTCAAATGATGGTGCTAAACATAAGAGAACCAAAGCTCTAGAAATAGCAATACCCTTGATTGTAGCATGCATAATTCTTGCATGTGCAGTTATTTTGATATACAGAAGAAAACTGGGGAAGGATTCAATCGTTGGAGGCGTGCCATCGTTTCGATTTCCAAGTAGAATTTCCTACTTTGAACTGATGGAGGCAACACAGAAGTTAGATGAGAGCAATTTTATTGGAAGAGGTGGTTTAGGTTCTGTTTTCAGAGGCCAGCTTTCAGATGGAACTCTCATTGCTGTTAAAGTTTTCAATTTGGAGTCACAACAAGCACCAAGGAGCTTTGATGCAGAGTGCGAAGCAATGCGAAATCTTCGCCATCGAAATCTTGTTAAAGTCATCACCAGCTGTTCAAATTCCATTGATTTCAAGGCCTTGGTAATGGAGTTTGTTCCAAATGGGAACTTAGAGAAGTGGTTGTATTCTCATAACCACTTCCTATCTTTCATGGAAAGGTTGAAGATAGTGATAGATGTTGCATGTGCATTGGAGTATCTGCACCATGGTAACACTAGAACTGTGGTGCATTGTGACTTGAAGCCAAGTAATGTTCTGTTGGATGAAGATATGGTTGCACATGTTTGTGATTTCAACATTGCTAAGCTTTTGGAAGAAGGTCAATCTGAAATTCATACAAACACCTTAGCCACACTTGGTTACATTGCTCCAGAATATGGCTCAAAAGGAATTGTTTCCATTAAAGGAGATGTGTACAGCTATGGTATTATGGTGATGGAAGTGTTCACAAGAAAGAAACCAACTGATGAAATGTTTTCTGAGGGAGTAAGCTTAAGGTCATGGATCCTAGAGTCATTGGCAGGTGGGATAACTGAGGTTGTGGATCCTAATCTGATGGAGGGTGAGGAACAAGTTATTTCTGCCATGGAATTAGCGCTATCAAATATCATGGAGCTGGCTCTGAATTGTTCAGAGGAATCTCCAAATGAAAGAATAAGTATGAAGGAAGCGTTTGATCGGCTAAACAAAATCAAAACCACATTTGTGAAGATGACACAAGGAAATAATTGA 2241 0.3891 MATLCQLASVSCHISLFRTIPYEIGDKLRNLQILHLHNNTLKGSIPPNIFNLSGLQRNNLSGVIPDSIGNFRSLQLLYISDNSFTNDPSSQELGFLTSLTKCRNLQKLLLSFNPLHGSLPNSIGNLSETLEFFDAESCNIKGQIPSQVGNLKNLYGLNLNDNQLVGEIPTTIGDMKLQRLDLSSNQLRGYIPSQICQMKILNQLLLSNNQIFGPIPRCVDQLSSLSILHLDSNNLNSTIPSTLWSLSDILEVNLSSNSFEGSLPIDISSMNAVINLDVSHNKLSGKIPTGIGSLQRILNLSLAYNMIQGPIPDSIGNMLSLEFLDFSHNLLSGTIPKSLENLVYLKFINLSYNRLYGEIPSGGNFANFRSQSFMMNDDLCGKPNFGVPPCSNDGAKHKRTKALEIAIPLIVACIILACAVILIYRRKLGKDSIVGGVPSFRFPSRISYFELMEATQKLDESNFIGRGGLGSVFRGQLSDGTLIAVKVFNLESQQAPRSFDAECEAMRNLRHRNLVKVITSCSNSIDFKALVMEFVPNGNLEKWLYSHNHFLSFMERLKIVIDVACALEYLHHGNTRTVVHCDLKPSNVLLDEDMVAHVCDFNIAKLLEEGQSEIHTNTLATLGYIAPEYGSKGIVSIKGDVYSYGIMVMEVFTRKKPTDEMFSEGVSLRSWILESLAGGITEVVDPNLMEGEEQVISAMELALSNIMELALNCSEESPNERISMKEAFDRLNKIKTTFVKMTQGNN 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272510g00005 746 Gene3D Ribonuclease Inhibitor 2 96 IPR032675 -
Stsc272510g00005 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Stsc272510g00005 746 PANTHER OS04G0122200 PROTEIN 16 739 - -
Stsc272510g00005 746 Pfam Protein kinase domain 461 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272510g00005 746 Gene3D Transferase(Phosphotransferase) domain 1 535 745 - -
Stsc272510g00005 746 ProSiteProfiles Protein kinase domain profile. 458 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272510g00005 746 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 535 744 - -
Stsc272510g00005 746 Gene3D Phosphorylase Kinase; domain 1 441 534 - -
Stsc272510g00005 746 SUPERFAMILY RNI-like 19 362 - -
Stsc272510g00005 746 SMART serkin_6 458 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272510g00005 746 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 98 394 - -
Stsc272510g00005 746 SUPERFAMILY Protein kinase-like (PK-like) 440 737 IPR011009 -
Stsc272510g00005 746 FunFam Serine-threonine protein kinase plant-type 440 534 - -
Stsc272510g00005 746 Gene3D Ribonuclease Inhibitor 97 399 IPR032675 -
Stsc272510g00005 746 SMART LRR_typ_2 222 246 IPR003591 -
Stsc272510g00005 746 SMART LRR_typ_2 28 52 IPR003591 -
Stsc272510g00005 746 SMART LRR_typ_2 176 198 IPR003591 -
Stsc272510g00005 746 SMART LRR_typ_2 318 342 IPR003591 -
Stsc272510g00005 746 SMART LRR_typ_2 151 175 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272510g00005 Stsc-Chr272510 23710 26893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272510g00005 23 743 Receptor kinase-like Gene Family AT3G47090 36.508 9.81e-142 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc272510g00005 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272510g00005 - K13420 qsa:O6P43_031966 792.341